barSeed - Barley Seed Development Database

Probe CUST_17770_PI390587928

Source Contig U35_2910

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17770_PI390587928	Hv_44K_v2	ATGAGATCAGATGCATGTCCGTTCTGATTCGTATTATAAACAGAGCACCGATTTGCTTAA	765	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21701.1	852	6e-24	408 - 466	100	59 / 59	plus	ABC08056
JLOC1	JLOC1_15055.1	697	3e-24	407 - 465	100	59 / 59	plus
Harvest21	ABC08056	825	3e-25	766 - 825	100	60 / 60	plus	ABC08056
Harvest35	U35_2910	825	3e-25	766 - 825	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_2910 825 Hv_44K_v2
CTCCCCTCCCCTCCCCGGTGGTTGGAGCCATTATAGAGGAGGAGAGCATCGTCTCCCACA
GTCCCAAGATCCCAACCCCATCTGCTACGTCCCTCCCCTGCCCCCGAATCTGTACTCTCG
CGCGCCGCGATGGAGGGGAGCAAGCTCAAGGCGGCCAGGCTCCTGGAGCAGATGAGCGCC
CACCTCGCCACCGACGCCGGCAAGGAGATCGCCAACAAGGTCGGCTTCGTCTACCAGCTC
AACATCTCGCCCAAGAAGATGGGCGTGGACGAGGAGATCTTCGTCGTGGACCTCAAGAAG
GGCGCCGTCTCCACAGGGAAGTACGAGGGCACGCCGGACGCGAGCTTCACCTTCACCGAC
GACGACTTCCTCGCCATCGCCAGCGGCAAGCTGAACCCGCAGATGGCGTTTATACGGGGT
AAGCTGAAGATCAAGGGGAGCATCAGCGCGGCGCAGAAGTTCACGCCGGACATCTTCCCC
AAGCCGGCCAAGTTGTAGAAGGCCGGATTGCCATGCCTTGCCTTGCCCTGCCCTGGTGAT
CGGTTAATAAAAGAGTCTAGTTATGTTCGTGATGGCAATCTGGTGTGACCAGAGGGGGCG
ATTGTTGCTGGTAACAGAGTTTGTTTACTTAGAACCACCGCACGAACAACAGGGGTTTCA
GTGTCTTGAGGTGAAATTCGTTTTCTTTGGTTGAGAAGGAGAACACGGTACGATGTGTGT
TGTGACGATGATGAGCTGTCTCGATTGATCACCGTTTGCTCTTCAATGAGATCAGATGCA
TGTCCGTTCTGATTCGTATTATAAACAGAGCACCGATTTGCTTAA

Homology of Contig U35_2910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g52720.1	123	2e-63	protein\|peroxisomal multifunctional enzyme type 2, putative, expressed
Brachypodium v1_2	Bradi3g58000.1	123	5e-70
Arabidopsis v10	AT5G42890.1	123	3e-51	\| Symbols: ATSCP2, SCP2 \| sterol carrier protein 2 \| chr5:17194458-17195910 REVERSE LENGTH=123