barSeed - Barley Seed Development Database

Probe CUST_17761_PI390587928

Source Contig U35_2917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17761_PI390587928	Hv_44K_v2	TGGCCCTTTAATCGGAAAGTGTTGCACAATGGATCAGGGTAAAGCTGTTATCAATTTCCT	878	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.026	1.244	1.773	0.916	0.671	0.416
Raw	80.106	65.385	96.022	70.243	19.958	13.910

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37060.2	2123	2e-24	918 - 977	100	60 / 60	plus	None
MLOC	MLOC_37060.1	3636	2e-24	937 - 996	100	60 / 60	plus	ABC16411
JLOC1	JLOC1_23950.2	3643	8e-25	914 - 973	100	60 / 60	plus
JLOC1	JLOC1_23950.1	2108	8e-25	914 - 973	100	60 / 60	plus
Harvest21	ABC16348	858	3e-25	799 - 858	100	60 / 60	plus
Harvest35	U35_2917	938	3e-25	879 - 938	100	60 / 60	plus

Contig Sequence (938 bp)

>U35_2917 938 Hv_44K_v2
GGCCGTCCACGCACCCGCTCCGCTCTCCTCCTCTCCGTCTCATATCAATTAGGTGGACGC
CGGCAGCCGGGAAAACCCTAGCTAAACCCCAGCCCCCAATCCCCATTCGCCAGAGATAAC
CGGCGGGCGGCGGCGAGGATGAGGAAGAAGGTGGACGAGCGCATCCGCACGCTGATCGAG
AATGGCGTGCGGCAGCGGCAGCGGTCCATGTTCATCATCGTCGGCGACAAGTCGCGCGAC
CAGATCGTCAACCTCAACTACATGCTGGCCAAGTCCCGCGTCAAGTCGCGCCCCTCCGTG
CTCTGGTGCTACCGCAACAAGCTCGAGATCAGCAGCCACAGGAAGAAGCGCGCCAAGCAG
ATCAAGAAGCTCATGCAGCGCGGGCTCATGGACCCCGAGAAGGCCGACCCCTTCTCCCTC
TTCCTCGAGACCTCCGACATCACCTACTGCATGTACAAGGACTCGGAGAGGGTCCTCGGC
AACACGTTTGGCATGTGCATACTGCAGGACTTCGAGGCGCTGACGCCCAACCTTCTGGCC
AGGACCATTGAGACCGTTGAGGGCGGTGGTTTGGTCATCCTGCTGCTCTCGTCGCTCTCC
TCGCTGACCAGTCTCTACACGATGGTCATGGACGTTCACGAAAGGTTCCGAACAGAGTCT
CATACCCAGGCAGCCACAAGGTTCAACGAGCGGTTCTTATTGTCCATAGCGTCATGCAAA
GCATGTATTGTGATGGATGACGAACTCAACATTTTGCCTATATCATCTCACATGAAATTT
ATACAACCAGTTACAAAGAATGAGGATTCTGAGGGATTGTCTGAAAGGGAACGAGAGTTG
AAAGACCTAAAAGATCAGTTCCGTGAAGACTTCCCGGTTGGCCCTTTAATCGGAAAGTGT
TGCACAATGGATCAGGGTAAAGCTGTTATCAATTTCCT

Homology of Contig U35_2917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi2g41187.2	875	7e-163
Arabidopsis v10	AT1G10490.1	1028	8e-130	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) \| chr1:3453589-3459925 FORWARD LENGTH=1028