barSeed - Barley Seed Development Database

Probe CUST_17757_PI390587928

Source Contig U35_2919

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17757_PI390587928	Hv_44K_v2	TGCATGGCCATGTGTGTAGCTCCCTTGAGAAGTTGAGATATAAAAGAAAAGAGTGTTTGT	1183	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.879	1.628	1.661	1.560	0.739	0.711
Raw	1513.890	4570.894	3860.517	5501.627	970.046	995.997

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361937	1285	2e-24	1185 - 1244	100	60 / 60	plus	ABC06987 ABC31816
Harvest21	ABC06987	1589	3e-25	1171 - 1230	100	60 / 60	plus	ABC06987
Harvest35	U35_2919	1295	3e-25	1184 - 1243	100	60 / 60	plus

Contig Sequence (1295 bp)

>U35_2919 1295 Hv_44K_v2
ACCAGTAGAGAGAGACCGACACACCCACACCCACACCCACAGCGGCAGAGCGCCCACGCC
GCAGGCAGGCGCGCACCGCAGCGGCAACCAACCAGCCCCCACACCCCCACCCCCGCCGAA
TCGGCTGCGCGGGCGCCGCCATGGAGAGGGAAGCCACGGCCTTCTACCCGCCGGCGCCGG
CGCCGCCGCAGCGGCCGACGCTCGCGCAGCCGCTCTCGTCCCGCGCGCCGCCGTCCGGCG
TCACGGTCGCCAGCGCGGGGCGGGGAGGAGGGGGAGGGGCGGGCAGGCAGTACCGCGGGG
TGCGCATGCGCAAGTGGGGCAAGTGGGTGGCCGAGATCCGGGAGCCCAACAAGCGGTCGC
GGATCTGGCTCGGCTCCTACGCCACCGCCGTCGCCGCCGCCCGCGCCTACGACACCGCCG
TCTTCTACCTCCGCGGCCGCTCCGCGCGCCTCAACTTCCCCGACCAGCTCCTCGACGGCG
CCCCCGCGGCGCCGGGCGACCTCACCGCCGCCGCCATCCGCAAGAAGGCCGCCGAGGTCG
GCGCGCGCGTCGACGCGCTCCACTCCGGCGGGATCCTTGTTCCCGGCGCCCCTCTCCCGG
CCCCGCCGTCGTCGCCGTCCCAGCGCCGCCGGCCCAAGAACCCCGACCTCAACCGGGAGC
CCACCCCCGACACCGACGACGACGAGTGAACCTCGCCCGCCCGATTCTTCACTTCTCCTC
CCACCACCGCCTACATACATACCTAGCACCAGCGCCTCTTAATTAGTCCTTAGCAGCAAT
CAGCAGCCAGCCAGCCAGCGAGCTAGCTAGCAGTAGCAGCAGATCAGTCATCTCAGTGAG
CAAGCAATCAGATACTAGTACTAGTTCAGTTCAGTGCACAAGAAGAAGAAAGGCATGGGG
AAGCAAGCAAGCAACCGAGCGTGGATCCGACACGCAAGGTGTTCGGTGAAATGCCGGGCG
AGCTCGGGGGCCGACCCGACCAATAATGGAGCCGCGACGTCGCAGTCAGCTCGGCCAGGA
GGTTAGTAGTAACTAAGTAGGGACCGGCCTAGGCTACCACCGGCGTCCCCCTCCCGTGGG
ATGTCTGTCCGGCCGAGGCGGCGACGGCGACTGCGACTGCGACGGTGAGCGAGCATGGTA
GCAGTAGTGGACACAGGGCGGGCATGCTGCTAAGCGAGGCGCATGCATGGCCATGTGTGT
AGCTCCCTTGAGAAGTTGAGATATAAAAGAAAAGAGTGTTTGTAAAGGAAAAAAAAAAAA
AAAAAGAATCGATCCATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2919 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None