barSeed - Barley Seed Development Database

Probe CUST_17755_PI390587928

Source Contig U35_2920

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17755_PI390587928	Hv_44K_v2	GAGTTTGTTTTGGCGCCACCTTTTTCATTCCCATGCGTCAGTCCACTGTTTCGTTCGTCC	1805	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.138	1.749	1.445	1.100	0.591	0.572
Raw	5815.663	14166.900	10065.757	11595.863	2260.140	2417.710

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363081	3049	2e-24	2955 - 3014	100	60 / 60	plus	ABC06991 ABC06992 ABC16526
MLOC	MLOC_39205.1	2289	2e-24	2047 - 2106	100	60 / 60	plus	ABC06991 ABC06992
MLOC	MLOC_39205.2	1134	2e-24	998 - 1057	100	60 / 60	plus	ABC06991 ABC06992
JLOC1	JLOC1_25550.1	2349	8e-25	2049 - 2108	100	60 / 60	plus
Harvest21	ABC06992	1954	3e-25	1806 - 1865	100	60 / 60	plus	ABC06992
Harvest21	ABC06991	286	3e-25	169 - 228	100	60 / 60	plus	ABC06991
Harvest35	U35_2920	1954	3e-25	1806 - 1865	100	60 / 60	plus

Contig Sequence (1954 bp)

>U35_2920 1954 Hv_44K_v2
GACCGCTACGTCGTCGAGGACATCGTTGAGTTCGGTGCGCCCTTCGGGTTCGGCCTCGAG
GCCGGCTCCAAGCCCGAGCTGCTGCTCACCATGAGCTGCCTCGTCGCCCGCGGCAGCCCC
GACGCCCTGCTCATCTGCAACGGCTACAAGGACCTCGAGTACGTCTCGCTCGCGCTCATC
GCCCGCACCATGGGCCTCAACACCGTCATCGTGCTCGAGCAGGAGGAGGAGCTCGACATT
GTCGTCGAGGCCAGCCGCCGCCTCAACATCCGCCCCGTCGTCGGCATGCGCGCCAAGCTG
CGCACCAAGCACGCCGGCCACTTCGGCGCCACCTCCGGCGAGAAGGGCAAGTTCGGCCTC
AACGCCGCGCAGATTCTCTCCGTGGTGGCCAAGCTCAAGGCCCTCGGCATGCTCGACTGC
CTCCAGCTCCTGCACTTCCACATTGGCTCCCAGATCCCGACCACCGCTCTGCTCGCCGAC
GGCGTCGGCGAGGCCGCGCAGATCTACTGCGAGCTCGCCCGACTCGGCGCGGCCATGCGC
GTCATTGACGTTGGTGGCGGCCTCGGCATCGACTACGACGGGACGCACTCTGCGGAGACC
GACATGTCGGTGGCCTACAGCCTGGAGGAGTACGCGGCGGCCGTGGTTGCCGCCGTCGGC
CGCGTTTGCGACCGCAAGGGCGTGCAGCACCCTGTCATCTGCAGCGAGAGCGGCCGCGCG
CTGGTGTCGCACCACTCGGTCCTCATCTTCGAGGCCTTCTCCGCGACGGCGCCGGCTTCC
AACATGATGGACCCGGCCACCGCCTACCTGCTCGACGAGCTCACCGACGACTGCCGCAAC
GACTACCGCAACCTCATGGCGTCCGCCGTGCGCGGCGACTTCGACACCTGCGGCCTGTAC
GCCGACCAGCTGAAGCGGCGCTGCGCCGAGCAGTTCAAGGAGGGGGTCCTCGGCCTGGAG
CACCTCGCCGCCGTGGACGGGCTCTGCGAGATCGTCGCCCGCGGCATGGGCGCGGCGGAG
GGGCCGCGCAGGTACCACATCAACCTGTCGGTGTTCACCTCCCTGCCGGACATGTGGGCG
ATCGAGCAGCTGTTCCCCATCATCCCCATCCAGCGCCTCCAGGAGCGCCCAGCCGTGGAC
GGCGTGCTCTCGGACCTGACCTGCGACAGCGACGGCAAGGTGGACCAGTTCATCGGCGGC
AGGAGCAGCCTCCCACTGCACGAGCTCCCGAGCCACGGCACCCGCGGCTACTACCTGGGC
ATGTTCCTGGGCGGCGCCTACCAGGAGGCGCTGGGCGGCCTGCACAACCTGTTCGGCGGG
CCGAGCGTGGTGCGCGTGTCGCAGAGCGACGGGCCACACTGCTTCGCCGTGACGCGCGCC
GCGCCGGGGCCGTCCTGCGCCGACGTGCTCCGCGCCATGCAGCACGAGCCGGAGGTGATG
TTCGAGGTGCTCAAGCAGAGGACCACCGACGACGGCGCGACCGCGGCGGCCCTCGCCAGG
GCGTTCGGGTCAATGCCGTACCTGTCGTTCGACGCCGAGGAGGCGGCGGCGATGAGCAGC
GCGGAGTCGAGCGGCATGAGCAGCGACTCGGAGGGGTCGGCGGCCGGCGCCGCCGAGGAC
GATGACGAGGAGTGGGAGTTCATGCGCGGGCTCACCGTGTGACGGCGAGCTCTTTTCTGT
ACCTATTATCACCGGCCCAACCGGCCGGTGATGTTTACCAGCCAGCGGCAGCAGCCGGTG
TTGTATCGTGTCCATGGTCGTAGTGAGGTCGTCGGGCGTCTCGTCGCCGTTTAGTTTCGC
CGCCGGAGTTTGTTTTGGCGCCACCTTTTTCATTCCCATGCGTCAGTCCACTGTTTCGTT
CGTCCCTTTTTTTCTCTTGGAATAACAAAAGGAAACTATTACTACTAAAAAAAAAAAAAA
ACAGAATTAAAAAAAAGGGGGGGNCCCGGTACCC

Homology of Contig U35_2920 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g04070.1	703	protein\|pyridoxal-dependent decarboxylase protein, putative, expressed
Brachypodium v1_2	Bradi1g50067.1	711
Arabidopsis v10	AT4G34710.1	711	\| Symbols: ADC2, SPE2, ATADC2 \| arginine decarboxylase 2 \| chr4:16560315-16562450 REVERSE LENGTH=711