barSeed - Barley Seed Development Database

Probe CUST_17751_PI390587928

Source Contig U35_2923

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17751_PI390587928	Hv_44K_v2	GAATGTTCCCTTGGTTATATCGGTCGGTATGCTTTGCTGGGCTCCTTGCAGCATAAAAAA	1738	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.216	0.946	1.497	1.373	0.584	0.495
Raw	214.447	252.330	370.014	516.010	79.729	72.077

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56159.7	1969	9e-22	298 - 355	98	57 / 58	minus	ABC06984 ABC40942
MLOC	MLOC_56159.8	2185	9e-22	298 - 355	98	57 / 58	minus	ABC06984 ABC40942
MLOC	MLOC_56159.4	2146	9e-22	348 - 405	98	57 / 58	minus	ABC06984 ABC40942
MLOC	MLOC_56159.5	2152	9e-22	348 - 405	98	57 / 58	minus	ABC06984 ABC40942
MLOC	MLOC_56159.6	1932	9e-22	348 - 405	98	57 / 58	minus	ABC06984 ABC40942
JLOC1	JLOC1_36301.3	1742	5e-22	1404 - 1461	98	57 / 58	plus
Harvest21	ABC40942	652	3e-25	41 - 100	100	60 / 60	minus	ABC40942
Harvest35	U35_2923	1838	3e-25	1739 - 1798	100	60 / 60	plus

Contig Sequence (1838 bp)

>U35_2923 1838 Hv_44K_v2
AGCAAATATATCATCCCTTTCGTCACCCCCACCTCCCCTCCCGATCCCCGTGCGCCGCCG
TGCTTCTCCCCAGTCCCCACGTCCACTCGTCGCGTCCCCGTCCGCCGTACGCCGTCTCGT
CCCCACCCAATCGCCGCCCCGGCCGCCGTCCGTCGGCGCCGCGTCCCTGCAGGTAGACCG
GAGAAGGTAGGGTGGTCCGCTGCGATGGCGCGCGTGTACGTCGGGAGCCTGGATCCTGCC
GTGACGGCCCGGGAGCTCGAGGACGAGTTCCGCGTGTTCGGGGTTCTCCGGAGTGTGTGG
GTTGCAAGAAAGCCACCTGGTTTTGCATTTGTTGATTTTGATGACAGGAGGGATGCTCAG
GATGCAATTAAAGATTTAGATGGCAAGAATGGTTGGAGAGTTGAGCTGTCTCGTAATGCC
AGCAGTGGTCGTGGTGGTCGTGATCGATCTGGTGGATCTGAGATGAAGTGTTATGAATGT
GGTGAGTCTGGTCACTTTGCCCGTGAATGCCGTCTGAGGATTGGTTCTGGGGGCCTAGGC
AGTGGAAGGCGTCGCAGCAGGAGTCGAAGCCGTAGCCGCAGTCGGAGCCCTAGATACCGC
AGGAGTCCAAGCTACAGCAGAAGAAGCTACAGCCGCTCTCCAAGGCGTCGTAGTGTGTCA
CCGGCTCGTGGGCGCAGTGTTAGCAGGTCACCAGTCCGTGGACGTGACGAATCTCCCGCC
TATAGCAATGGGTATCGCCGTAGCAGGAGCTAGAGCTGTATGTGATGTCTGGAGAGTGTT
CTATTGCAAATATTACTCTATACCCGTCTGCTATGAACAGTGTCATGTCCCCCATTTGAA
AGATCCGCCATCGACTGCTTGAGTTTGGTTAAGTTCCCCGTAACTTTTTCCGCCCTATTA
TGGTTGTGTTTGATTTTATCTCTAGATAAACTTATGGATGGGTGTATCATTAACTAAGAC
CAGCTGTCTTTCTTTTGTGTGTTAAAAAGGCATCGTCCTGCACTGCTTAAAAGCGTCGGC
CGGCTACGGCTTTCGGTTATGTCTTCATGGTTTTGCTCACTCTCCGTTCCTCCCACGCCC
TCGCCTGCTCCATGCAAACTGCGTATTAGTTCCTGCAGAGGTCCCTTCTGCGTCGCGTGT
TCTTCGTTGAAGATGCTGCTCGTCAAAAAGCAGTAACCACCTTTCTTATTTTGCAAATTG
GTAAGGTTTGATTGTGCTGATAAATGCAGCTTCTGGAAGTGTTCGAAGCGCAAATTTCTT
TGTAGGAGAGTCTCCAGAAACTGCATCTGCTTCTCTGGGACTGCCAAGGTATTTAGTTGA
ACGGCTTGCACCCGAGGTCATCTGGGGCAACTATACCAGGGCAAGCATTGCAAAAGAGGT
GTAAGCCTGTCTAGACTGCGGTGCAGAGTTCGGCAGTTGGCATTGTTCTTCATGCTCTTT
GTTCTCAACTTATCCCCTACATGCTTCCCCGACATGCTGCTGCTGAACAGAGATGCTGCC
CCTTCTCCATATTCTGCTTTCCTCACTGCGTGTCCGATTGAGCTCCTCAGTAGCATTCAA
GTCCGATATCTTCCAGTGTCCAGTTACATGCCGTTGCTGTTGGATGCAACATATTCGTGA
ATAGGTTTGTTCTAATTTGGTTGAGCCTGCACTTGTGGACCTGAATTTTCAGATCCTAGA
TTGTTCTGACATTGTCGTGTTATTTTACCTTGATCCGCTTTCTGTTTTCAGTTTGTGTGA
ATGTTCCCTTGGTTATATCGGTCGGTATGCTTTGCTGGGCTCCTTGCAGCATAAAAAAAA
AAAAGAAAAAAAATACCAGAGGAGGGGCGCCGGTACCC

Homology of Contig U35_2923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None