barSeed - Barley Seed Development Database

Probe CUST_17750_PI390587928

Source Contig U35_40072

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17750_PI390587928	Hv_44K_v2	TGACTGACATGGGGTTCCCTTTTCTCTTGCCGCAGGAGGGGCCTGTCCAAGTTTTTCGAC	248	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36469.1	1247	3e-21	496 - 555	97	58 / 60	minus	ABC10191 ABC10192 ABC37563
Harvest21	ABC36374	345	3e-25	249 - 308	100	60 / 60	plus
Harvest35	U35_40072	345	3e-25	249 - 308	100	60 / 60	plus

Contig Sequence (345 bp)

>U35_40072 345 Hv_44K_v2
GCACGTGGGCAGGAGGAGGACATCGGCTGCCCGTCCGGGTCCCAGATGTCGGCGGTGTCG
TCGGACGAGGAGCTCGACCTCGACGACGACGCCACCTCCAGCTCCAGCTCCAGCTCGTCG
GGATCCACCGACAACTTCGAGATGTCTTCCCTCATGGCGCAGCTGCCGCTCAAGTACGTC
GTCTCTGGCCGGACCGGACGCCGCAGTTCTTTCTTCCGAGGCTCGATCTTGATCTCGGAG
CCGTGGTCTGACTGACATGGGGTTCCCTTTTCTCTTGCCGCAGGAGGGGCCTGTCCAAGT
TTTTCGACGGCAAGTCGCAGTCGTTCGCGTCGCTGGCGGCGGTGG

Homology of Contig U35_40072 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None