barSeed - Barley Seed Development Database

Probe CUST_17749_PI390587928

Source Contig U35_2924

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17749_PI390587928	Hv_44K_v2	CTGTACCCAGTAACTATTTGTCTCGTGCAATATTGGCCATTAAATTGTTTATCAACTCAT	1963	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	15.626	4.414	1.149	0.703	0.359	0.547
Raw	529.915	237.721	54.630	60.324	9.439	16.399

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9891.1	3500	2e-24	763 - 822	100	60 / 60	minus	ABC02265
JLOC1	JLOC1_6428.1	2350	8e-25	2234 - 2293	100	60 / 60	plus
Harvest21	ABC02265	2015	8e-21	1964 - 2015	100	52 / 52	plus	ABC02265
Harvest35	U35_2924	2050	3e-25	1964 - 2023	100	60 / 60	plus

Contig Sequence (2050 bp)

>U35_2924 2050 Hv_44K_v2
GGCGAGCTGGAAGGAAGTTGACTGGTAGAGCCAGCCACCGTCCATCTTAGCCTGGCAGGT
GCTTCTCAGGTTCCATGGCTTCCAGCAAGGGAGCGGCGTCCCTGCTCTGCATCAAGCTCG
TGGTCTGCCTCTGCTTCTTCGGATTATGCCAAGGCAGGGGCACGGCCAAGCCGCCATTCA
CGCTGAAGAATCTCCCTCCCCTCGAGAAGGCGAGCAGCTTCCCCGCGATGCGCCGCGAGA
GGTACGACTACATTGTCGTCGGCGGGGGCACCGCCGGCTGCCCCCTGGCGGCCACATTGT
CGCTCAAGTACAAGGTGCTCGTGCTGGAGAGGGGCGGATCCCCTTATGGCAACCGCAACA
TCTCCTACATGGAGAACTTCCACATCGGCCTGAGCAACACGGCGCCGGACTCTTCGTCGC
AGGCCTTCGTCTCCACCGACGGCGTCATCAATGCCCGGGCAAGGGTGCTGGGCGGTGGTA
CCTGCATCAATGCTGGCTTCTACAGCCGAGCCAGCTCAAGCTTTGTGCAGGATGTTGGCT
GGGAAGAAGACCTGGTGAATGAGTCCTACCCTTGGGTAGAGGATAAGGTTGTCCAGTGGC
CTAAGATCGCGCCTTGGCAGGCTGCACTGCGGGATGGGCTTGTTGAAGCAGGTGTATCCC
CTTTCAATGGGTACACCTATGATCATGTTTCTGGGACCAAGGTTGGTGGCACCATCTTTG
ACGCAAATGGCCACCGCCACACAGCGGCCGACTTGCTTGCTGCTGGAGACCCTAACAACA
TGAGGGTCCTGCTTCATGCTAGTGTGCACAAGATAGTGTTCAACTCGCAGCAAGGACGAC
TGAGACCAAGGGCTATCGGGGTACAATTCGCCGATGAAGATGGGAGACTCCACCAGGCAC
TCCTCAACAACAACAGGGATAGTGAGGTCATCGTCTCTTCTGGTGCAATTGGCAGTCCCC
AGCTGCTGCTCCTCAGTGGGATCGGGCCCAAGAACGATCTTAAGAATCATAACATTCCTG
TGGTTCTTCACAACAAGTATGTGGGGAAAGGGATGGCTGACAACCCCATGAACTCCATCT
TCATACCTACGAAAAGCCCCCCTCGGCAGTCACTGATTGAGACTGTTGGAATCACTGAAG
CCGGTGTGTTCATCGAGGCCAGCAGTGGTTTTGGCCAGTCTGAAAAAAGCATCCACTGCC
ACCACGGAATCATGTCTGCTGAGATCGGACAGCTGTCCACAGTTCCTCCGAAGCAAAGAA
GCCTGGAACTAGCCAGGGAGTATGCGCATAACAAACTTAGTCTACCCAAAGAGGTGTTCC
AAGGAGGTTTTATCCTCGAGAAGATCGATGGTCCGCTGTCTACAGGCCATCTTGTCCTTG
CTGACACTGATGTCAAGAACAACCCGGCAGTTACTTTCAACTATTTCAGCCATCCACAAG
ATCTCAGCCGTTGTGTCTATGGCATCAAGACCATTGAGAAAATACTGAAGACAAACAGTT
TCGCTCATCTGACTCCTGATGGTGCTGGATATGAAATGGAAAGGGTGCTCAACATGAGCG
TGCAGGCTAATGTGAATCTGATACCCAAGCATACCAATACCACAGAATCCCTAGAGCAAT
TTTGCAAGGACACGGTAATCACCATCTGGCACTACCATGGTGGGTGTCATGTAGGGAAGG
TGGTCGACCAGCAGCACCGGGTGCTTGGAGTCTCAGGGCTCCGCGTTGTTGATGGCTCAA
CGTTCTCTAGGTCACCAGGGACCAACCCTCAAGCCACGGTCATGATGATGGGCAGGTACT
TTGGAGTGAAGATCTTAAGGGAACGGCTAGGACCAGCAGCTGGAGTGTAGTAGATTCCTG
AACACCTGCCTTTTATGATGTGTGTGTGACCTAGAAAAGAAATCACTAATTTTTGCTGGG
ATCCAGTGTGAATCACCAATGTAAGACAGTCTAGGAGTTTCATCTGTACCCAGTAACTAT
TTGTCTCGTGCAATATTGGCCATTAAATTGTTTATCAACTCATCTTTCTTCTTATAAAAA
AAAAAAAAAA

Homology of Contig U35_2924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g19930.1	586	protein\|HOTHEAD precursor, putative, expressed
Brachypodium v1_2	Bradi4g28870.1	592
Arabidopsis v10	AT1G72970.1	594	\| Symbols: HTH, EDA17 \| Glucose-methanol-choline (GMC) oxidoreductase family protein \| chr1:27452872-27455706 FORWARD LENGTH=594