barSeed - Barley Seed Development Database

Probe CUST_17742_PI390587928

Source Contig U35_2928

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17742_PI390587928	Hv_44K_v2	GACAAAAAATCTCTCTCTCTCTCTCTCTTGATCTTGAATACAGAGGCGAAGAGGGCTGAA	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365891	2747	2e-24	2372 - 2431	100	60 / 60	plus	ABC10853
Harvest21	ABC33527	642	3e-25	476 - 535	100	60 / 60	plus
Harvest35	U35_2928	770	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (770 bp)

>U35_2928 770 Hv_44K_v2
CTCGTCGTTGGCACTTGTGCCCTTGCAATGGGCCGATCCAGTGGAAGGGGCCCATGTGGA
GACATGTATCTGTCGCCTGCTAGGACCCATGATGGCGCGCTCGGATAGAGCTTGGAATCC
TAACCATGAAAAAGAGAATAAAAATGGAAGAAGATTTGAAAAGTTTTCCCTTCTATCTCT
TGGAATTAAGGATCACTGCAAGTTTAATCTCTACGTTAATAGTAGTACCACTGCACCAAA
CCCCGGATATTGTACTAGCTATTAGTAGTAATCTGGAGAAAGGAATCTTGTAACATGAAC
TCCACTGTTTAATCCCGAAAGAGACTGCAGCGTTAGGTCGCGCTTGTAGCGTTAAATACT
CCAGGTTATTGTTTAAGCACCTAGCAGTATATTACTACTAGTGTATTACTTGCGTCTGTT
TGTACAATGTCTCCCATCAAGGTTTCCTCTTGAGCTCGGCACTGACAAAAAATCTCTCTC
TCTCTCTCTCTTGATCTTGAATACAGAGGCGAAGAGGGCTGAAAGGGATGGAGAGCATGG
ACAGCGACTCGGAGTGAAGAGCGCAAAGAAGAGGAGAGGAGAGGTCTAGCAAGCGAGACA
GCCAAGGAAGAAGACGGGGATGCCGTGTGTGGCCGGGAGCGAGGGGTGGTAGGAGAAGAA
ACAAAACCGGTAGAGAGCTTAGCCGAAAGGAATGGACGTGTGTTTTGTGTAAATGGAGGT
GGAGGAGGCAACAATGGGATGCGCGTGCAGACGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None