barSeed - Barley Seed Development Database

Probe CUST_17741_PI390587928

Source Contig U35_2929

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17741_PI390587928	Hv_44K_v2	TTTTCCTTTTTGCGGGGGCTTGGTTCGAAAATTTCATACGAGTATCATCTTGCGGGCCAT	1174	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374601	2895	2e-24	2256 - 2315	100	60 / 60	plus	ABC10853
MLOC	AK365891	2747	2e-23	2690 - 2747	100	58 / 58	plus	ABC10853
JLOC1	JLOC1_3403.4	2445	8e-25	1750 - 1809	100	60 / 60	plus
JLOC1	JLOC1_3403.3	1604	8e-25	909 - 968	100	60 / 60	plus
JLOC1	JLOC1_3403.2	1639	8e-25	944 - 1003	100	60 / 60	plus
JLOC1	JLOC1_3403.1	1612	8e-25	917 - 976	100	60 / 60	plus
Harvest21	ABC10853	1261	5e-23	1179 - 1237	98	59 / 60	plus	ABC10853
Harvest35	U35_2929	1258	3e-25	1175 - 1234	100	60 / 60	plus

Contig Sequence (1258 bp)

>U35_2929 1258 Hv_44K_v2
GGAGGCAAATTCAGCTTCCGTGGATTGTTCGGCCGATCTAGCCACCAGTAGATTTCAGCT
TACGATATGATGATATGAATCGCAGCATCAAGGGAAAGGGAACACCACCGGTAGGGTAGG
GCAGATGGTTATCTCTCCCTCATATACTCCTCAGCTCAGCTCTCGGGTCTCCTTTTCTTT
TCTGTATGTGTATGGATGGGCATCAACAGCAGTTGTAGGTTGTAGCGCCCCCGGGAAGGA
AAAAAAAAGAGCAGTTCTAGTAGTACGTAGCTTTTGCTAGGTTTTGCATATATATTTGTA
TGCATCATCTCGCTGTGGTAAAGAGTCTCTGGTAGTACTAGTAGTAGTACCACCGATCCA
CCACCCTACCCACCCTTCTTCTCCTTTACCCCTCCTCAGCCCCTCCAACCACCGCCGCAT
CATCACCAGTCCACCACCACCCCGATCCCATGATTGACGCCATGTTTTCTTCCTTTGGTT
GCGCGATCAGGTCCGTTGAGGAGCGATCGGGCGGCGTGCACAAGCGGTCGTCGCCCGACA
AGGCGCCGCACAACAAGCCCCCCGCCGTGGAGCATCATCACATGGATTCCAAGAACGCCC
ACCACCACCACCACAACCACAGCAACCACGACTCGCCGCTGGTGGCCGCCGCCAACGGTG
CCGGAGCCGGCGAGAAGCTTGGCGGGGAGCGGTTGGAGCTTCCCCGGATCTACATCTCGC
TGTCCCGCAAGGAGAAGGAGGACGACTTCCTGGTGATGAAGGGCACCAAGCTGCCCCAGA
GGCCCAAGAAGCGGGCCAAGAACGTGGACAAGTCGCTACAATTCGTCTTTCCGGGGATGT
GGCTCTCGGATTTGACCAAAAGCCGTTACGAGGTGCGCGAGAAGAAATGTGTCAAGAAGA
GGCGAAGAGGGCTGAAAGGGATGGAGAGCATGGACAGCGACTCGGAGTGAAGAGCGCAAA
GAAGAGGAGAGGAGAGGTCTAGCAAGCGAGACAGCCAAGGAAGAAGACGGGGATGCCGTG
TGTGGCCGGGAGCGAGGGGTGGTAGGAGAAGAAACAAAACCGGTAGAGAGCTTAGCCGAA
AGGAATGGACGTGTGTTTTGTGTAAATGGAGGTGGAGGAGGCAACAATGGGATGCGCGTG
CAGACGATGACGATGATGATTCTAGCAGGCTGTTTTTTCCTTTTTGCGGGGGCTTGGTTC
GAAAATTTCATACGAGTATCATCTTGCGGGCCATCGCCGAGCAAAAAAAAAAAAAAAA

Homology of Contig U35_2929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g46620.1	364	6e-51
Arabidopsis v10	None