barSeed - Barley Seed Development Database

Probe CUST_17740_PI390587928

Source Contig U35_40079

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17740_PI390587928	Hv_44K_v2	GCAAAGGAAGCATCTCATGCATCTTCAGAAGACAGTCTTTCAGATGGAATAGGATCCGAG	515	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63900.3	3938	2e-24	1451 - 1510	100	60 / 60	plus	ABC05295 ABC16730
MLOC	MLOC_63900.4	2353	2e-24	1793 - 1852	100	60 / 60	minus	ABC05295 ABC16730
MLOC	MLOC_63900.1	3343	2e-24	1866 - 1925	100	60 / 60	minus	ABC05295 ABC16730
MLOC	MLOC_63900.2	3449	2e-24	1866 - 1925	100	60 / 60	minus	ABC05295 ABC16730
JLOC1	JLOC1_41905.2	3469	8e-25	1533 - 1592	100	60 / 60	plus
JLOC1	JLOC1_41905.1	3239	8e-25	1410 - 1469	100	60 / 60	plus
Harvest21	ABC36378	591	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_40079	591	3e-25	516 - 575	100	60 / 60	plus

Contig Sequence (591 bp)

>U35_40079 591 Hv_44K_v2
GAAGATATCAGCATGCAGCTGTCTTTGTTGGTGCTCGGCTGCACGTTACTGGAGGTGTCC
TTAGAGGAGGGAGAGCTATTGAAGGGGAGGGTGCCATTGCAGTTCTGGACACTGCTGCTG
GAGTTTGGCTGGATAGAAATGGCATTGTGACCTCTCGCACTCTAAAATCTTCCAATGAAC
ATGATGCTTCTTCGGATCTACTTCGTCGTTGCCGCCATGCAGCTGCTTCTGTTGGTTCTC
AGATATATATTTATGGTGGACTGAGGGGAGATATCCTCCTCGATGATTTTCTCATTGCTG
AGAATGCACCCTTCCAATCAGAAACTGATAGGGTCCCAAGGTCAGAAAATCAAAATAGAA
ACAATAATTTTAATTCTGACTCAACGCCCTTCGAGCAATATACAAATAACAGTCATGATA
CAGCTCCTGGTTTCAGCACGGACAAGAAGTCAATTGACATGTTGACAGAGGCCTCAGCTG
CCGAAGCTGAAGCTGTTAGTGCTGTATGGCGAGCTGCAAAGGAAGCATCTCATGCATCTT
CAGAAGACAGTCTTTCAGATGGAATAGGATCCGAGTCCCCTCTCAGTGAAC

Homology of Contig U35_40079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05240.1	892	6e-76	protein\|serine/threonine protein phosphatase, putative, expressed
Brachypodium v1_2	Bradi2g36370.2	829	2e-87
Arabidopsis v10	None