barSeed - Barley Seed Development Database

Probe CUST_17739_PI390587928

Source Contig U35_2930

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17739_PI390587928	Hv_44K_v2	AAACTGAAAGCCGTTCCCGCATTGGACATGATGAGGTACCAAAGGCTCAGCCCGGACTGC	261	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357805	2039	2e-24	259 - 318	100	60 / 60	plus	ABC10853
MLOC	AK365891	2747	2e-24	256 - 315	100	60 / 60	plus	ABC10853
MLOC	MLOC_5299.3	2214	2e-24	1161 - 1220	100	60 / 60	minus	ABC10853
JLOC1	JLOC1_3403.4	2445	8e-25	436 - 495	100	60 / 60	plus
Harvest35	U35_2930	779	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (779 bp)

>U35_2930 779 Hv_44K_v2
CTGGATTGCTGCTCTCTTCCTCCTCCTCCTTCCCTCCCACCCTCCCTCCTCGTCTCTTCT
TCTCACAATTTTTTCCTGTAAATTTCGTGTCCGCCTCTTGTTCGTTCCGTGCAGACGAAC
GGGAGAGGGAGAAGAGAGTGATTGCTCAGCGCAGGAGGAAGGAACCTGCCTTCTCGAGCG
GTTGGCCGGAGGCCAATTTTGATGCGTGGCCTCCTCGAGGTCCACGCGATTGGCAGGGAC
GCCGCGTCGACGAGCTCATCCAAACTGAAAGCCGTTCCCGCATTGGACATGATGAGGTAC
CAAAGGCTCAGCCCGGACTGCCTCCCGCTCACGAACGGTGGCGGCAGCGGCGGCGTCGCA
CGCAAGCCGGCCTCGAGATCCTTCAGAGACGACGAAGGCCCGGCCGCCGCCACCGACAGT
TCCCGAGTGGCCTCGTACCTCGCGGCCTCCCAGGCGGACACCAAGCCGCCGGTGCGGGCG
CGCGCACCACCGCAGCCGCCGTCTTCGTCGGCCGTGCGTAGCCCGGCGCGGGACCACGTC
CACCACCACCCCTCCGACTCCTCCGACACGGCCTCCCCGAGCTCCACGGGCGCGGGAACC
GGCGCGGTCGGCGGCGACGTGCTGCTGCAGTGGGGGCACAACAAGCGGTCCCGCTGCCGG
CGCGACTCCTCCGCGGCGTCCTCGTCGGCGTCGCCGTCCTCGCAGCGTCGGCAGGCCCCG
GGCAGCGGCAAGATCCAGCGGCGCGCGTCNGCACCAGCGCCGGCGGAGAAGCTGATGCC

Homology of Contig U35_2930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None