barSeed - Barley Seed Development Database

Probe CUST_17738_PI390587928

Source Contig U35_2931

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17738_PI390587928	Hv_44K_v2	GGGATTGTTGTGTTTACATGAAGACATATTTTTATTTGAGTGGCATTGACATGTTGTGCT	2083	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67256.2	2809	2e-24	31 - 90	100	60 / 60	minus	ABC08287 ABC38717
MLOC	MLOC_67256.1	3095	2e-24	44 - 103	100	60 / 60	minus	ABC08287 ABC38717
JLOC1	JLOC1_44388.1	3020	8e-25	2903 - 2962	100	60 / 60	plus
Harvest21	ABC08287	2167	3e-25	2084 - 2143	100	60 / 60	plus	ABC08287
Harvest35	U35_2931	2162	3e-25	2084 - 2143	100	60 / 60	plus

Contig Sequence (2162 bp)

>U35_2931 2162 Hv_44K_v2
ACTACACAGGGAACTACAACCTGAAGTCATCCATTTGCTTGAGGAATCTGAATCCGTCAG
ATATTGAGAAGATGGTGTCAATCAAGGGTATGATAATTCGAGGCAGCTCCGTCATACCAG
AGCTCAAGGAGGCTGTCTTCCGCTGCCTTGTTTGCGGCTTTTACTCAGAACCTGTCATGG
TTGACAGAGGGAGAGTAACTGAGCCACACATATGTCAGAAAGAACAATGTAAAGCCTAAA
ACTCTATGACTCTAGTGCATAACCGATGCAGATTTGCGGACAAGCAGATCATAAAGTTGC
AGGAAACACCAGATGAGATACCGGAAGGTGGCACTCCTCATACAGTCAGTGTTTTGATGC
ATGATAAGCTTGTTGATGCTGGAAAGCCTGGAGATAGGGTTGAGATAACTGGGATATACA
GGGCCATGAGTATCAGAATCGGACCAAGTCAGAGGACTGTGAAGTCAATATTCAAGACAT
ACATTGATTGCCTTCACATAAAGAAGACAGACAAGTCCAGACTTCATATTGAGGACTCTA
TGGATACTGATAACACCAATGCTAGCAAGTCTTCTGAAGACAGCCATGTCACAGATAAGA
TAGATAAATTAAAAGAGCTTTCAAAGTTGCCTGACATCTATGATAGATTGACTAGATCAC
TGGCTCCAAACATATGGGAACTGGATGATGTTAAGAGGGGCCTGCTTTGCCAGCTTTTTG
GTGGCAATGCTTTGAGGCTTCCTTCTGGAGCTAACTTCAGAGGTGACATCAATATTTTGC
TTGTTGGTGATCCTGGAACAAGCAAATCCCAGCTTCTCCAATACATGCATAAACTATCTC
CTCGTGGTATTTACACAAGTGGAAGAGGCAGTTCAGCAGTTGGCCTTACTGCTTATGTTG
CGAAGGACCCTGAAACTGGTGAAACTGTTCTTGAGAGTGGAGCACTTGTTTTGAGTGACA
AAGGTGTTTGCTGTATTGATGAGTTTGATAAGATGTCTGATAATGCCCGAAGCATGCTGC
ATGAGGTGATGGAGCAGCAGACTGTATCCATTGCAAAGGCTGGAATTATTGCATCTTTGA
ATGCTAGAACATCTGTCCTAGCATGTGCAAATCCATCTGAATCGCGTTACAATCCAAGAC
TTTCTGTGATTGACAATATCCACCTTCCTCCAACACTGCTGTCAAGGTTTGACCTGATTT
ATCTGATATTGGACAAGGCAGACGAACAAACTGATAGACGCCTTGCTAAGCATATTGTCT
CATTGCATTTCGAGAATCCAGAAGTAGTGGAGCACCAGGTCTTGGATTTGCCCACGTTAG
TTGCGTACATCAGCTATGCAAGAAAGTTTATTCAGCCAAAGTTATCTGATGAAGCTGCAG
AAGAATTGACCCGTGGCTATGTTGAGATGAGGAAAAGAGGGAACAATCCTGGGAGCAGAA
AGAAGGTCATCACAGCAACAGCTAGGCAAATTGAGAGCTTGATCCGTCTTAGTGAAGCAC
TGGCACGAATGCGTTTTTCAGAAGTGGTTGGAGTGCGAGATGTAGCAGAAGCCTTTAGGC
TTCTTGAAGTTGCCATGCAGCAATCTGCAACTGATCATGCAACAGGGACGATTGATATGG
ATCTAATCATGACTGGGGTATCTGCAAGTGAAAGGCAAAGACGTGACAACCTTGTCTCAG
CTATCCGAGACCTTGTCATGGAGAAAATGCAGCTTGGAGGGCCCTCGATGCGTATGGCTG
AGTTGCTGGAAGAAGTGAGGAAGCAGAGCTCCATGGAAGTTCATCAGCATGATCTCCGTG
TTGCTCTTGGCACTCTGCAGAGTGAGGGCTCCGTATTTGTCCACGGAGACAGTTTCAAGA
GGACCTGATGTGTTTGCCCATGGCGACGTTGTAGCCAGCATCAACTGAACCTACCATGCT
CCCGTCTCTTCTCTTGTAGCGACGTTGTAGCCAGCATCAACTGAACCTACCATGCTCCCG
TCTCTTCTCTTGTAGAGCTGGGTGCTAACCTGTTTGGTCTTTTAATGGCCCTGACTTCTA
GATGGAGGTCTATCCTGTGCCTTAGATTTCTTAAGTTGCTCTTGGGATTGTTGTGTTTAC
ATGAAGACATATTTTTATTTGAGTGGCATTGACATGTTGTGCTTGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_2931 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g36390.1	863	protein\|MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed
Brachypodium v1_2	Bradi2g40600.1	856
Arabidopsis v10	AT2G16440.1	847	\| Symbols: MCM4 \| Minichromosome maintenance (MCM2/3/5) family protein \| chr2:7126536-7130665 REVERSE LENGTH=847