barSeed - Barley Seed Development Database

Probe CUST_17734_PI390587928

Source Contig U35_2933

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17734_PI390587928	Hv_44K_v2	ATAGTGGTCAAGATTGTATTAGCTGTTCGCTGTTGTGCGTTTGTTCAGGATCAGGTCACG	1154	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.373	1.547	1.193	0.840	0.306	0.299
Raw	3220.940	5903.867	3852.323	4433.397	544.624	583.912

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251195.1	1246	2e-24	1100 - 1159	100	60 / 60	plus	ABC09853 ABC21829 ABC43344
MLOC	MLOC_16414.1	909	2e-24	154 - 213	100	60 / 60	minus	ABC09853 ABC43344
JLOC1	JLOC1_11297.1	927	8e-25	204 - 263	100	60 / 60	minus
Harvest21	ABC09853	1309	3e-25	1147 - 1206	100	60 / 60	plus	ABC09853
Harvest35	U35_2933	1313	3e-25	1155 - 1214	100	60 / 60	plus

Contig Sequence (1313 bp)

>U35_2933 1313 Hv_44K_v2
TCCGTGCCCAAAACTGAGCAAAACCTCAAAGCGAAGACGAGAGAAGGTCGCTACCTAGGG
CAATGGCGGCGCCGCCGGACAGCAAGTCTGATAAATCCCCAGAGGAGCTCCTGTGCGCGG
CGGCGGAGGCCGGTAACGACGATGCTATCGCCGAGCTTATTTCCTCTGGCGCTGACGCCA
CCTACTTTGACGCCTCCGGCATGACACCACTCATGCGCGCGGCCACCGGTGGCCACGTCG
CTGCCGCGCGACTCCTGCTCGATGCCGGCGCGCCCTGGAACGCGCTCTCTCCCGAAGGTC
TCTCTGCGGGTGACCTTACCTCCGACCCCGCCACATACGACCTGCTCCTCGACCACGCCC
TGCGCTCCGAGCTCATCCTCGGCACCGTCGCCCGCCGGCAGGCGGCCCCCGCGAACTCCT
CCGACGGCGCTCCCGCCGAGACCTACCTCGACTCGAGGGTTTCGTTCAGCGAGGACCGGG
TGATGGATGCGGAAAGCAAGGCGGTGATGATGGAGTGGGAGCGTCCGCTCATGGAGGCGC
ACGCGCGGGCGGTGTGCGCCAGCGGCGGCGGCAAGGTCCTCAACGTGGGGTTCGGGATGG
GGCTCGTGGACCAGGCGATACAGAGGTACGAGCCCGAGGAGCACACCATCGTCGAGGCCC
ACCCGGAGGTGTACGCCCGGATGCTCAAGCTCGGGTGGGGTGAGAAGAAGAACGTCAGGA
TCCTCTTCGGGCGATGGCAGGACGTGATCCCGCAGCTCGGCTCGTATGATGGTATATTCT
TCGACACCTACGGGGAGTACTACGAGGACATGAGGGAGTTCCACGAGCACCTCCCCGAGC
TGCTGAAGCCCGGAGGCGTCTACTCCTACTTCAACGGGCTGTGCGGCGACAACGCCTTCT
TCCACGTGGTGTACTGCCAGCTGGTGGCGCTGGAGCTGGCGAGCCTCGGGTACTCGACGC
AGTTCATCCCCCTCCCCGTCAAGGACTGCCTCAAGGAGGAGGTGTGGGAGGGGGTGAAGC
AGAAGTACTGGCAGCTCGACACCTACCACCTCCCCGTCTGCCAGGCAGATTTTGAATCGG
AGTAGCATCTGTGTTACCAGCCACTCACTACTGGGGTACTCGATCTGTGTTACTACCAGT
AGTGCTCCTACTTAATAGTGGTCAAGATTGTATTAGCTGTTCGCTGTTGTGCGTTTGTTC
AGGATCAGGTCACGCCTGCCTGCCTGATTGTGTATGGATTGTGGTTCCGATGAAACAACT
CCCGTGGAAAATTCGGTCTCCGGCATGGGTTTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2933 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55330.1	336	0.0	protein\|ankyrin repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g07860.1	339	0.0
Arabidopsis v10	AT5G65860.1	346	5e-149	ankyrin repeat family protein \| chr5:26347706-26348746 REVERSE LENGTH=346