barSeed - Barley Seed Development Database

Probe CUST_17732_PI390587928

Source Contig U35_2934

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17732_PI390587928	Hv_44K_v2	ATGGTTTTATTTGTCCTACAAGGAACAAAGAAATTGGCTAGGCCTGTCAGGGTGAAAAAA	1169	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18158.1	1222	3e-22	495 - 550	100	56 / 56	minus	ABC07664 ABC40347
JLOC1	JLOC1_12557.1	1273	1e-22	493 - 548	100	56 / 56	minus
Harvest35	U35_2934	1240	3e-25	1170 - 1229	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_2934 1240 Hv_44K_v2
GAGCACAGTAAATCATCTTCTCCTCTCTCTCTCTCTCTCCCCCAGCGGGCTGACTGCTCT
TGCGACTGGACTGGGGGCGAACCCTCGATCGGCGCGGGCGGACGGCGGCGACCACCGGAG
GCGAGAGATGGTGGTGATCGAGCTCGAGCCGGAGCACGAGGGCGAGGAGACGACACGCCC
CTCCTTGCCGCCGGAGTTCGTGGAAGCCCCGGACCCGAGGAGGGCGGAGGAGGACGAGGA
GGCCTTCGAGGACGCGCTCACCGACGAGCAGCTGCGGGAGAAAGCTAGAAGCCAAGCAAA
CGATGCAAAAGCAGAAGGAAACAAACATTTTGCAGCTGGAGAGTACGAAGATGCATTATC
AAAATATGAAATTGCATTGCAAATTGCTGCTGAACTGGAATCTTCTGAAGATATATCCTC
TGCATGCCATTCAAATCGTGCTGTATGTTTCTTGAAATTGGGGAAATATGATGAAACAGT
TAAGGAGTGCACCAAAGCGCTTGAGCTGAATCCTTCATATTTGAAAGCCTTGCTTCGGAG
GGGAGAAGCACATGAAAAGCTTGAAAACTATGATGATGCTATTGCTGACATGAAAAAAAT
CATTGAGCTAGATCCTTCAAATCAACAGGCTAAGAAATCATTGTTCCGACTTGAGCCACT
GGCAGCGGAGAAAAAGGAAAAAATGAAGGAGGAAATGCTTGCAAAGCTGAAAGATCTGGG
CAACTCGGTGCTGGGGCGGTTTGGTATGAGCGTGGACAATTTCAAAGCTGTCAAGGATCC
AAACACGGGCTCGTACTCCGTTTCTTTCCAGAAGTAGTAGCAATAGCATATATAATGAAT
TATACAGACAAACATGGCTCGGTGTCCATTGAGGGGGAGTCTCCAGTACATCCTTTCAAT
CATGGTGGCTATTGTGCGCGATAAGTTATGTAATGGTCTTGCACTCTTGCAGTTAGAACG
CTCTATCTGAAGATGAGCCTGATCGTTCTTGGACTTTATTCTCCTTTGGTGCTTTCATGT
ATGATGCACGTGTACATTTGCTGCCCAGGCACCAAATTTGTTTTTGTAAACGGCTCTTCA
TTTTTCCTTATTTTTTAACATGGATCCACTATCTGTTGCCCAATTGCTTTCATGGCAGAT
CCTTGTCTTCTCGCCTGTTGGTACACCTCATGGTTTTATTTGTCCTACAAGGAACAAAGA
AATTGGCTAGGCCTGTCAGGGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2934 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34540.1	237	2e-97	protein\|tetratricopeptide repeat protein 1, putative, expressed
Brachypodium v1_2	Bradi4g36770.1	230	6e-98
Arabidopsis v10	AT4G30480.2	277	1e-71	\| Symbols: TPR1, AtTPR1 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:14897500-14898937 FORWARD LENGTH=277