barSeed - Barley Seed Development Database

Probe CUST_17729_PI390587928

Source Contig U35_2936

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17729_PI390587928	Hv_44K_v2	TGTGTGTTTGTGATGTGAATCATCTATTTCCTGTCACATAATTCAGTTTCCTTCCTCTGT	2361	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.423	1.412	1.892	0.986	0.574	0.389
Raw	50.400	64.095	91.907	69.058	15.817	11.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78476.1	239	7e-23	167 - 226	98	59 / 60	minus	None
MLOC	MLOC_30129.1	972	3e-21	1 - 54	100	54 / 54	minus	ABC00344 ABC47831 ABC50451
JLOC1	JLOC1_19968.1	989	8e-25	12 - 71	100	60 / 60	minus
JLOC1	JLOC1_52302.7	2746	4e-23	82 - 141	98	59 / 60	plus
JLOC1	JLOC1_52302.6	2179	4e-23	82 - 141	98	59 / 60	plus
JLOC1	JLOC1_52302.5	2972	4e-23	1 - 60	98	59 / 60	plus
JLOC1	JLOC1_52302.4	3200	1e-22	1 - 59	98	58 / 59	plus
JLOC1	JLOC1_52302.3	2628	1e-22	1 - 59	98	58 / 59	plus
Harvest35	U35_2936	2455	3e-25	2362 - 2421	100	60 / 60	plus

Contig Sequence (2455 bp)

>U35_2936 2455 Hv_44K_v2
TTTGGCACCGTTGTCGGGGACTAGCATCGAGCTATTGTGTTAGGCTATAGACTAGGTTTT
TCTTGTTTTCTTTTTGTGACGTTTTTATGTGATATATCTTTCACAACTAACCCCTGTTCT
AGTATATTTCCGCTTTATTTCTTTTTCCTTTCTGCAGGTTAGAACAATCTTCTTGGAAAT
GGCATTCTACTCCGATCATCATGCTTATGTGAGCAATAGCACCAATAGCACCGAAAGTGT
TCAAGACCTGATAAGTAAGATTTCCCATCAATTAGATGAATTAGCTTATCAGCGAGGTAC
AAATGTTGAGAATGCACCTAGTTGTTATGATCGTTATTATTTAGGCCATCCTTATGCTGC
TCCTACATGCTATATTTGTGGATTTTAGGGCCATTCACCCGCTGAATGTCAGCGTGGTTA
CTCTTACCCTCCAGATTGTTTTGGCATGAGCTTCGCCCCACAACATAGCTCATACCACAA
CAATTACTCACATGGGTGGCCTGAAAACCAGAATATGTCATATAAGAGCAACAACCCTGA
GATCTCACCATTGGCTTCAAGAGATCATATGTAGGGATTTAGGTATGAACATGAGAGCCA
CAACTATGCACCACAACAACTCTATTCAGCTCCTACTCATATACCTCAACATCAAGAGAT
GTGTCCAATGTAGTTAAATGGTTCTCCATTTGGTGAGCCAACACCTCCAGCACATGTTGA
GTATCCAATGCAAGTGCCTACTCAAGATGATTTTGACGACATAGAGAAGCTCACACTTCT
TAGCCTCGAGCTCACTTGGAGCGCTCAGGATGATCCTATTATGAAGGTTATACTAGAGGA
AATTAAGAAGATCAAGAGTGGGAAATAGCTAGTGGAAGAAGTGAGGAAGATTGAGAGGAA
TATCAATGCTGGAGGTACTATCTCATCACTACTTGAGCTGAGTGTTGGTGGAATTCACAT
TCAGTTGAGCAAGATAGCATACGCCAAGAGGAAGAGAGACCTCAGATTGAAGATGTATTT
GAAGCCAATGCACAAGATGATCTAGAGCTCGCCCAAGTGATCAAGTAGAAGAACCATCAT
CTCTCACTCCTGAAGAAGTAAAAGAAGTTGTTGTACTTGAAGATGAAGAACTAGAGATTC
ATTTGCCAATCGTCATACAAGATTGTGATGTTTTTGCTTGTGCACGATCTACTACATGGT
GACCATGTTCAAGGTGACATTCCTTGGTACCCTGGTGGATTCAAAGCATGGTGAATAGGA
GAAGCAAGGGACACACACGAAGAAGAGTGAAGTTGGAGCGGGCATGAGATAAGCAAGAGG
AGAAGAGCTGCAGTTGGTGAGATGATCGAGAGGGTGCTACATCATCCAAGACCGAAAAGT
GCGCTAAGGCACTATAAACTTCAAGGTTTGGAACCGTGAAGGAAAGAAGAGACCGAGGGG
TCAAACTAAAGAAGCGGAGGATCAACTTGTGCAGAAAGAAGAAAAGTAGAGGGGCCAAAT
TGCAAAGGAGGAAATCAGCCGTGAGGGGTCAAAATCCCTAGAGAAGCCTTCGATCCCCTT
CGGGACTCTTACCTCAATCTTCTTCTTCCCTCAAGCCTCCTTCCCCACCTCCAGCCACCG
CCACGGCCAGGCCGGCATGGTAGGTGCACCAACCGCACCACCCTGTACCACCATCTCCAT
CCATTCGTCTACCGTGCCACCGCAAGCGCGCCACCCAACCATCCATCCACTCCAGCACCG
CCATCCACTCCAGCCCGTCGTCTGATCCCCATCCCCTGCCGCTGCTCCTCTCTCCAGCGC
CCCTAGCTGCTCCCTCTCCCCACGTCCCTGTTGGATCTGCTGCTGCTCCCTCTCCCCTCG
TATCTGCTGTTGCTCCCTCTCCCCTCGTATCTGCTGTTGCTCCCTCTCCCCTCGTATCTG
CTGCTGCTCCTCCCTACTCTCGTCTCTGCTGCTGCTCCTTTTCCCATGATCTGTTGCTGC
CCCTTCTTCCTTGAGCTGCTGCTCCTCGCTCTCCAAACTGATACTACTGTTGCTCCTAAC
CCGAATCTCTTCTTTTCCTTCAACTAGTTGCTGCTATTATTTATCTCCCTCGCTCTCAAA
TTTCTGTAAACCTGAGAAGTGTGATGTTCAGAATTATGTAATATTCAGATTTGGTTCAGT
TTCGTACTTGTAATATCATGTTACATCTTGTGTGTTGTGACATGTTATGCCTAGTTGCTA
TCTATAATGTTTGGTCTATGTGATTTTGCTTTGTGAGTTAGTAATCTGCAAGCTTGTGTT
TGTGTTCAATCTTGTGAACTTGTTCCATTTTATAGTCTACGTGTTAGATCAAGTTTGTGT
GATATATGTATATATAGTATGTGTGTGTTTGTGATGTGAATCATCTATTTCCTGTCACAT
AATTCAGTTTCCTTCCTCTGTTAAATGCTAAAAAAAAAAAAAATTTTTAGAAAAA

Homology of Contig U35_2936 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None