barSeed - Barley Seed Development Database

Probe CUST_17726_PI390587928

Source Contig U35_21948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17726_PI390587928	Hv_44K_v2	GGTTTCAGTCTGGAGCTCATTGCATGTAAATTTAAACAGTAATGATAATTGGCAACCATT	593	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59151.2	6531	2e-24	3719 - 3778	100	60 / 60	minus	ABC10351 ABC16747
MLOC	MLOC_59151.1	7222	2e-24	4582 - 4641	100	60 / 60	minus	ABC10351 ABC16747
MLOC	MLOC_59150.3	7345	2e-24	1363 - 1422	100	60 / 60	minus	ABC10351 ABC16747
JLOC1	JLOC1_38469.2	4154	8e-25	2585 - 2644	100	60 / 60	plus
JLOC1	JLOC1_38469.1	4249	8e-25	2680 - 2739	100	60 / 60	plus
JLOC1	JLOC1_38468.2	2971	8e-25	1385 - 1444	100	60 / 60	minus
JLOC1	JLOC1_38468.1	2953	8e-25	1367 - 1426	100	60 / 60	minus
Harvest21	ABC16747	674	3e-25	594 - 653	100	60 / 60	plus	ABC16747
Harvest35	U35_21948	674	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_21948 674 Hv_44K_v2
GCGCCTCTGTTCTTTGCTTCACCTGGGCACTTATTGTTGCACTCGGCTTATCCACATTGC
GATATACCGAAGCTGTAAGCTCAAGGAACATGATAATCGTTGGTTTTACCCTGTTCATCT
CCCTGTCCATCCCCGCATACTTTCAGCAATACGAACCCAGCTCCAATCTCATTCTACCGG
GCTATCTTCTTCCGTATGCTGCAGCTTCGAGTGGACCAGTTCACACTGCCAGTTATGGGC
TAAACTATGCAGTGAATGCTCTTCTATCCATCAACGTTGTGGTGGCTCTGGTTGTTGCAA
TAATCCTTGACAACACAGTGCCGGGAAGCAAGCAAGAACGAGGCGTATACATCTGGTCAG
ATCCCAAGTCCCTGGAGTTGGATCTTGCATCCCTGGAACCCTACCGGTTACCAAATAAGA
TATCATGCTGGTTCAGATGGGCTAAGTGCGTTGGCTATTGACATAGCATGGCCCCCCTGC
ACTGGTTGTTCATGCTCTGAGGTAGTGATGCGAAGATTCTGTATTCTATTGCAACAGTTT
GTATGGCATTCAGGTAGATTAGTAGGGGCTATAGCTACTGGTGGTTCGTTCTGGGTTTCA
GTCTGGAGCTCATTGCATGTAAATTTAAACAGTAATGATAATTGGCAACCATTCTTCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_21948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g30810.1	812	3e-71	protein\|nucleobase-ascorbate transporter, putative, expressed
Brachypodium v1_2	Bradi1g27197.1	785	2e-71
Arabidopsis v10	None