barSeed - Barley Seed Development Database

Probe CUST_17720_PI390587928

Source Contig U35_19632

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17720_PI390587928	Hv_44K_v2	AAGTTACAACATCCCTGATGATGTTGATGAGGAAGATCTAATGGGAGAGCTGGATGCTCT	552	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.948	1.346	1.775	1.490	0.580	0.660
Raw	721.751	1616.978	1816.007	2474.539	327.207	407.471

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367793	954	2e-24	528 - 587	100	60 / 60	plus	ABC07551 ABC14049 ABC16807
MLOC	MLOC_17901.1	627	3e-21	139 - 198	97	58 / 60	plus	ABC14049
JLOC1	JLOC1_12369.1	843	2e-21	140 - 199	97	58 / 60	plus
Harvest21	ABC14049	872	3e-25	523 - 582	100	60 / 60	plus	ABC14049
Harvest35	U35_19632	963	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (963 bp)

>U35_19632 963 Hv_44K_v2
CGGTCGGGGGAATTTCGAAACACACAAAGAGAGACGCCGCACTCACTCTGCTGATACAAG
AAACCGCCGCCGCCGCCGCCGCCGCCCGCCGGAGCCGGAGATGAAGAAGATCTTCGGAGC
CAAGAAGAACAAGGACCCGCCGCCCACCATCCAGGACGCCACCAGCCAAATAAACAAGCG
GGGCGAGAGCGTGGACGAGAAGATCAAGAAGCTGGACGAGGAGCTGGCGCGGTACAAGGA
GCAGATCCGCAAGGCCCGCCCGGGCCCCTCGCAGGAGGCCATCAAGGCCCGCGCCATCAG
GCTCCTCAAGCACAAGCGCATGTACGAGGAGCAGCGCAACATGCTCTACAACCAGACCTA
CAACCTCGACCAGGTCGGCTTCGCCGCCGACGGCCTCAAGGACGCGCAGCAGACCATGAA
TGCGATGAAGGCCGCCAACAAGGAGCTAAAGGGGATGATGAAGACTGTGAAGATTGAGGA
CATCGATAATATGCAAGATGAAATGACGGATCTGATGGACGTGAGCAACGAAATACAAGA
ATCTCTTGGTAGAAGTTACAACATCCCTGATGATGTTGATGAGGAAGATCTAATGGGAGA
GCTGGATGCTCTGGAAGCTGATATGGAGTTTGAGTCAGCTGCAGTCCCTTCGTACCTTCA
GCCAGATGAGGAAGCTGATCTTAACTTGCCTGCTGCACCGACTTATCCTGCAGCAGTTCC
AGTAAGCAGGCACCAGGAGGACGAGCTTGGACTGCCACCGGTACCTCGAGCATCGCTCCG
TAGTTAGAACTTGGAAGTATTTCCCGTCCTTGTTCTCAGTGTTACTGTTACCTCATTGTT
ATTGATGCGAGAGTAGTCTTTGTGTTTGTACTTCAACAATCCTTGTTAGCCAGTTCTTGA
TGGTACTGCTTCTTGCGGTTAAGCTGTGGAATGTACCTAGTTTTCGGCTCTGTTCTGCTC
TAT

Homology of Contig U35_19632 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01350.1	233	6e-135	protein\|SNF7 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g03580.1	229	6e-144
Arabidopsis v10	AT3G10640.1	235	1e-109	\| Symbols: VPS60.1 \| SNF7 family protein \| chr3:3323501-3324905 REVERSE LENGTH=235