barSeed - Barley Seed Development Database

Probe CUST_1771_PI390587928

Source Contig U35_6220

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1771_PI390587928	Hv_44K_v2	CTGATAACGTATCAGAGTAAAATGAGATTGAATGAAAGTGAATGGACAATCAGTCCTGAT	979	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80636.3	2190	2e-24	1018 - 1077	100	60 / 60	plus	ABC01489 ABC13767 ABC38080 ABC39506
MLOC	MLOC_80636.1	3043	2e-24	1018 - 1077	100	60 / 60	plus	ABC13767 ABC38080
JLOC1	JLOC1_53690.6	2290	8e-25	1021 - 1080	100	60 / 60	plus
JLOC1	JLOC1_53690.4	2181	8e-25	906 - 965	100	60 / 60	plus
JLOC1	JLOC1_53690.3	2313	8e-25	1021 - 1080	100	60 / 60	plus
Harvest21	ABC38080	295	3e-25	25 - 84	100	60 / 60	minus	ABC38080
Harvest21	ABC13767	1080	3e-25	980 - 1039	100	60 / 60	plus	ABC13767
Harvest35	U35_6220	1080	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_6220 1080 Hv_44K_v2
GCAATTATTCTTGTGCAGTGCTGCCGACTCGTGGTTACAAATCGATTCACTTCAACGCCG
CGCTGTGCGCTCCGCGCATAGCACCGGCTCTTGGTCGCCGACGCAGCCCTGCACCGGGGC
TGTGACTCGAGCGCTTGAGGGCGCTTGCCGCGCGGCTGTGCCTCGCGTTCGAGTCCGCCG
AGCGTCGCGGGATGGCATGCGCGGAGGCGCGGTGGCGTCGTCGGCCGCGGCGTCTGAGAA
GGTGCGTATGCCGGAAACGAAGACGGAGGTCGAGGCCCCGGTCGGAGCACAACAACCGCA
GGGGTGGGGGGCGACAGTGAGGCAGCCTCGGCTTCATCGATCACGTCGTACTGCAGGGGT
GAAGAGAGGACACCGACCGGTTCAAGGCACTGCACCGGCAGCGGCGCCACGGACTACAGC
GCGGCCGTCACAAAGGCCAGCATCGGCGGCGCCCTGGTGGTGGCGGCGAGGCCGAGAGCC
GCTGGGTTCGACTACCCTGTGCCACGGCCGTGGCTGCTCGACGGCACGGAGCCAGAGACC
ACCAGGCGGCGGCGAGCAGAGGGACTCGCGGCAACGGCGATGTCACGGATGTGAAGCCGG
GTAACGTGGAGGTTCCCGCCGGACAGTAGCGGTCCAAGGCCACGCCGGCCGCCACACCTG
ACAATGGGAGCACCGACGGGCGTTAGCAGCGGCCGCCAGGGCGGAATCCGGGCTGTGCGC
GCCGCCGTCGGAAGTCGCGTCAGAGGGCCGCGGGCGCGAGCGCCACCACGTCGTGAGGAT
GTGAGTCGCGGCCGTGTCTACCTCGTCCTGGGGCGGAGTCTTTATCCGCCGCGCCGGAGC
AACGCCGGGATGGGCTTACCTTGCCGTGAAGAGGAGTATTCGGTGGTCCAGCATCGACGG
GTAGGTGCCAAAGCCGCCGCTGTCTGCTGCTGGTTCACCTTCTTTTCTGTCTATGATCGA
ATCGCTCAGCGTGAGCGTGCTGATAACGTATCAGAGTAAAATGAGATTGAATGAAAGTGA
ATGGACAATCAGTCCTGATTTTTATTGATTCTCAAGTTTATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None