- Probe CUST_17719_PI390587928
- Source Contig U35_19633
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17719_PI390587928 | Hv_44K_v2 | GAGTTTCTGTTCGTGTGGTTGAATCAGTTAATCAAGAGTCTTTCGTTCTGATTTCAAAAA | 374 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.725 | 3.555 | 1.304 | 0.720 | 0.241 | 0.386 |
| Raw | 1190.663 | 2495.024 | 801.571 | 744.141 | 78.939 | 143.789 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365933 | 2664 | 6e-24 | 2439 - 2497 | 100 | 59 / 59 | plus | ABC12029 ABC12030 |
| MLOC | MLOC_58156.1 | 2817 | 3e-22 | 2582 - 2640 | 98 | 58 / 59 | plus | ABC12029 ABC12030 |
| JLOC1 | JLOC1_37755.1 | 2823 | 1e-22 | 2531 - 2589 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC12029 | 441 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus | ABC12029 |
| Harvest35 | U35_19633 | 441 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus |
Contig Sequence (441 bp)
>U35_19633 441 Hv_44K_v2 GTCACGCAGCGCCGCGTCGTGCGCAACGTCGGCAGCGACGCCGAGGCGACGTACACGGCC AAGGTCACCGCCCCGGACGGCGTGCGCGTCAGGGTGAGCCCGGAGACGCTGCGGTTCAGC ACGACGCAGAAAACGCAGGAGTACGTGCTCACATTTGCGCAAGGAAGCCCCGGTANGCGC CACCGCGAAGTACACGTTCGGGTCGATCGAGTGGAGCGACGGCGAGCACTCGGTGACGAG CCCCATCGCCGTCACCTGGCCGGCGAGCAAGGTTGCGGAGATGTGAATGTGATCGCTCGT GGGGTGGGCACTACATAGTACGGAGTACATAGTACAGTACGTGCGACTATGCGAGAATTT ATCCCATTTGCTGTGAGTTTCTGTTCGTGTGGTTGAATCAGTTAATCAAGAGTCTTTCGT TCTGATTTCAAAAAAAAAAAA
Homology of Contig U35_19633 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |