barSeed - Barley Seed Development Database

Probe CUST_17718_PI390587928

Source Contig U35_19634

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17718_PI390587928	Hv_44K_v2	ATTTGCTGTGAGTTTATGTTCGTGTGGTTGAATCAGTTAATCAAGAGTCTTTCGTATTTC	505	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.726	3.561	1.348	0.697	0.240	0.361
Raw	958.057	2015.386	665.846	586.489	62.312	108.219

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58156.1	2817	9e-22	2573 - 2627	100	55 / 55	plus	ABC12029 ABC12030
JLOC1	JLOC1_37755.1	2823	5e-22	2522 - 2576	100	55 / 55	plus
Harvest21	ABC12030	587	3e-25	23 - 82	100	60 / 60	minus	ABC12030
Harvest21	ABC12029	441	8e-21	366 - 420	98	54 / 55	plus	ABC12029
Harvest35	U35_19634	587	3e-25	506 - 565	100	60 / 60	plus
Harvest35	U35_19633	441	8e-21	366 - 420	98	54 / 55	plus

Contig Sequence (587 bp)

>U35_19634 587 Hv_44K_v2
ACTACATCACCTTCCTGTGCGCGCTGGGCTACACCGCCAGGCAGGTCGCCGTCTTCGGCT
CGTCCATCAGCTGTTCGACGCGTGCGGGCTCCGCCGTGGGCGACCACAACTATCCGGCCT
TCTCGGTGGTGTTCACCTCGAACAAGTCGGCGGTCGTCACGCAGCGCCGCGTCGTGCGCA
ACGTCGGCAGCGACGCCGAGGCGACGTACACGGCCAAGGTCACCGCCCCGGACGGCGTGC
GCGTCAGGGTGAGCCCTGAGACGCTGCGGTTCGGCGCGACGCAGAAAACGCAGGAGTACG
TGCTCGCATTTGCGCAAGGAAGCCCCGGTAGCGCCACCGCGAAGTACACGTTCGGGTCGA
TCGAGTGGAGCGACGGCGAGCACTTGGTGACGAGCCCCATCGCCGTCACCTGGCCGGCGA
GCAAGGTTGCGGAGATGTGAATGTGATCGCTCGTGGGGTGGGCACTACATAGTGGAGTAC
GTGCGACTATGCGAGAATTTATCCCATTTGCTGTGAGTTTATGTTCGTGTGGTTGAATCA
GTTAATCAAGAGTCTTTCGTATTTCAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_19634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g57130.1	781	6e-52
Arabidopsis v10	None