barSeed - Barley Seed Development Database

Probe CUST_1770_PI390587928

Source Contig U35_6221

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1770_PI390587928	Hv_44K_v2	TAAAAAGTAGTGGTGGTGTGTGTTCTCGTCCCGTAGTTCGGCGTATTTCTCGTGTAATAA	692	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.478	1.897	1.289	0.819	0.278	0.311
Raw	6854.543	13507.703	7893.900	8198.673	938.269	1148.718

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62101.1	966	2e-24	896 - 955	100	60 / 60	plus	ABC13769
JLOC1	JLOC1_40618.1	922	8e-25	785 - 844	100	60 / 60	plus
Harvest21	ABC13769	816	3e-25	693 - 752	100	60 / 60	plus	ABC13769
Harvest35	U35_6221	816	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (816 bp)

>U35_6221 816 Hv_44K_v2
GCCGCAGCCGCAGACCATTTACGCCATTAGCAGGAGCCAACCTGGCCACCACCCATCACT
TCCATTCCCACAGCGCAAGCCTGTAAAGTGTTAAGCGCCTGGCTTCGCTCTGCTCTATTT
AACCATCACACTGGCTGACTCCGGCGTTGCATCGCCACCCAAGCCTAAGAAACCACACAG
CTCAAGGAAGCTCTTGTTTGTTAGTCATGGCGATGGCGCTCGGTAAGCTTGCGGTGGCCG
CGTTGGTGGCGTCTCTCCTTCTGCTCAGCACCATCAAGGCCGCCGACTTCCCTGCTCCAG
CTGCTGCTCCGCTCGGCCCCCCTCCCCACAACATCGTAGACCCCTCTAAAGACTGCGGGT
GGGCGTGCAACCTGCGGTGCAGCGCCAACTCGCGGCAGAACCTGTGCAGCCGGGCGTGCC
TCAAGTGCTGCAGTGTGTGCCGCTGCGTGCCGGCGGGCACGGCCGGCAACAAGGAGACCT
GCGGCAAGTGCTACACCGACTGGACCACGCACGGCAACAAGACCAAGTGCCCCTGAATAT
CTTCGGCCGGCTTAAATATCTTAGTAGAGTAGCTAAGATTTGCTCGTGGTTGTCGTTAGC
GGTACCGGTGGCCTTCGTGATTTCGTCTTGGTGTGGAAGGAACGGTGTTGACTAGCACTA
GCTAGCTGGTGAACCCGGTGTGTGTTCTTGTGTAAAAAGTAGTGGTGGTGTGTGTTCTCG
TCCCGTAGTTCGGCGTATTTCTCGTGTAATAAAGCCCATCCGGCGGTTTATGTGATGAAT
GCGTCTCCCTCTCCTTCGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None