barSeed - Barley Seed Development Database

Probe CUST_17708_PI390587928

Source Contig U35_45903

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17708_PI390587928	Hv_44K_v2	AGGGAAGCCTTGAAGAATTCTGCAAAGGCTATCTGAAGTTTGGGATCAACACAGAACCTG	339	GeneList: plum1 MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.200	0.167	0.698	1.680	1.657	1.983
Raw	2.573	2.678	24.553	89.784	32.139	41.569

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56801.4	2239	7e-23	1654 - 1713	98	59 / 60	minus	None
MLOC	MLOC_56801.3	2063	7e-23	1573 - 1632	98	59 / 60	minus	None
MLOC	MLOC_56801.5	2840	7e-23	2322 - 2381	98	59 / 60	minus	None
MLOC	MLOC_56801.6	2670	7e-23	2051 - 2110	98	59 / 60	minus	None
MLOC	MLOC_56801.2	2235	7e-23	1586 - 1645	98	59 / 60	minus	None
JLOC1	JLOC1_36771.1	528	4e-23	447 - 506	98	59 / 60	plus
Harvest21	ABC45290	400	3e-25	340 - 399	100	60 / 60	plus
Harvest35	U35_45903	400	3e-25	340 - 399	100	60 / 60	plus

Contig Sequence (400 bp)

>U35_45903 400 Hv_44K_v2
CGTGGACGACGATGCTGTGCCTAGCCTCCTGCTCCTCCCCGCCCTCCGTCCCGCCGCGCC
CCTCCTATCCGGCTGCGGTCCGGCCCCGTCCGGGTATCCGGGGTGGCTCCGGCGCCGGCG
GCAATGTGCCTTCTTCACTCCGCTGGCCGTCTCCACTGAAGGCGAATAGCAGAATTTATG
TTGCCGAGACTGCGCGGGAAAACAAAACTGTGGCAACAGAAGATGGTGTCGGCCACCTTC
CCATATACGATCTGGATCCGAAGTTGGCAGAATTCAAGAACCACTTCAATTATAGGATGA
GAAGGTACCTTTACCAGAAACATTTGATTGAGAAACATGAGGGAAGCCTTGAAGAATTCT
GCAAAGGCTATCTGAAGTTTGGGATCAACACAGAACCTGG

Homology of Contig U35_45903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None