barSeed - Barley Seed Development Database

Probe CUST_17698_PI390587928

Source Contig U35_21956

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17698_PI390587928	Hv_44K_v2	GGGTTTGCAATGGGTTTATGATTTTGATAGATCTGTATCTGTCCTGTACTCCCTTAGTCC	466	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57293.1	1710	7e-23	379 - 438	98	59 / 60	minus	ABC26584 ABC49894
JLOC1	JLOC1_37111.1	1437	4e-23	133 - 192	98	59 / 60	minus
Harvest21	ABC49894	508	1e-23	19 - 78	98	59 / 60	minus	ABC49894
Harvest21	ABC27172	526	1e-23	424 - 483	98	59 / 60	plus
Harvest21	ABC26584	559	1e-23	467 - 526	98	59 / 60	plus	ABC26584
Harvest35	U35_21956	559	3e-25	467 - 526	100	60 / 60	plus
Harvest35	U35_48295	508	1e-23	19 - 78	98	59 / 60	minus
Harvest35	U35_28352	526	1e-23	424 - 483	98	59 / 60	plus

Contig Sequence (559 bp)

>U35_21956 559 Hv_44K_v2
GCGGGCAGGGGGTGCTGCGGCCGCCGAACGGCGACCCCGGGTTGGACGGGATGGTGATCG
TGCTGGGGCACGAGCTGGCGGAGCTGGCAACCAACCCGCTGGTGAACGCGTGGTACGCCG
GTGACACGCCAACGGCGCCCACGGAGATTGCCGACCTCTGTCTCGGGGTCTACGGCGACG
GCGGTGGAGCAGGTGGGTTCGTTGGGAACGTGTCCCACGCAGCCGACGGCAGCTCCTACA
ACGTGAACGGCGTGAATGGCCGGCGGTTCCTGGTGCAGTGGCTCTGGAACCCCGTCCGCG
CCGCGTGCTACGGACCCAACTCCAGCAACTGAAGCCGCTCTGCTATTCCCCTGATCCGTG
GCTTCTCTCAGTTGATGCCATTGCGCTGGATGGCGTTGCAGAGGCAGGAAATTTGAATGT
CTGAAATGTCATTCAGACTCGATCTGTTCCTTGATTTGTTGACCCAGGGTTTGCAATGGG
TTTATGATTTTGATAGATCTGTATCTGTCCTGTACTCCCTTAGTCCTAAAATAAATAATT
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31430.1	328	4e-54	protein\|phosphate-induced protein 1 conserved region domain containing protein, expressed
Brachypodium v1_2	Bradi1g26950.1	340	3e-52
Arabidopsis v10	None