barSeed - Barley Seed Development Database

Probe CUST_17697_PI390587928

Source Contig U35_21957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17697_PI390587928	Hv_44K_v2	TTTGAGAAGTATCTTGATGAATGCTGCAAGTGGATTACTGAACTAGAGCAGCTGGTTCAA	866	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.210	1.159	1.267	0.801	0.397	0.342
Raw	118.941	155.966	169.829	162.730	29.191	27.043

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373309	1724	2e-24	871 - 930	100	60 / 60	plus	ABC25967 ABC26118
MLOC	MLOC_53145.2	948	2e-24	621 - 680	100	60 / 60	minus	ABC25967
MLOC	MLOC_53145.1	1431	2e-24	1008 - 1067	100	60 / 60	minus	ABC25967 ABC26118
JLOC1	JLOC1_34114.1	1491	8e-25	364 - 423	100	60 / 60	plus
Harvest21	ABC16991	922	3e-25	860 - 919	100	60 / 60	plus
Harvest35	U35_21957	929	3e-25	867 - 926	100	60 / 60	plus

Contig Sequence (929 bp)

>U35_21957 929 Hv_44K_v2
AGAGCCCACTAACTCCGTCTCGATCTCCTCGTCCCTGTATCCCCGGCTCCCCGCGCCGCC
CTCGCCGGAGAGGAGCCCCTCGGCCATCCGCGGCAATGGCGTTCTCCTTCTCCTCGCCGG
CGCAGCAGAACCCTTTCCAGACGCCAACGCAGCAGAATCCGTTCCAAACCCCAGCCCCGC
AGAACCCGTTTCAGACTCCGGCGCCGGCGCAGACTCAGGCGCCGGCGCAGTCGCCTTCGC
CGTTCCAGTTTAACTTCCAGCAACCCCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAACAGGCCGCGGCGACGGCGCAGC
CTCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGATGCTGTATACAAAGGAGGGGAAGCCCG
CAGGGTACAACACGAAGTGGGACGAGCTCCACGCCGACTCGCAGAAGGCGCTGCTTCAGA
TCGAGGATAAAATACGGGAGTACAAGGACGAGAGTGAAAGGTTGGATCAGTGCAGCCGCC
TTCATGACTCCTCAATCTCAAATGTCAATTTTGAGCTCGATGCAAGTCACATTGCTCAGG
AACTTGCAGGGACTGCAACCGTAATTGAGAGAGAGAAGGCATCTGTTCAAGAGTTGATGA
CTGTTGTTAATGAAATGATGTGGAACACAGAATTTGCTATTCGCTCATATATGATGTTGA
GACCAAGGTTCCTCAAATCAGCCACTGGTTCTTCAAATCCTTCTGGGCCTGCTGGAGTTC
TGCCCAATCAGCCTGGACCAACCAATGATTTCTATAGTGGCGTCCCAAAGAGGCCTTCCC
TTTTTATGCTGCAAACTGTCAACAAGTTTGAGAAGTATCTTGATGAATGCTGCAAGTGGA
TTACTGAACTAGAGCAGCTGGTTCAAATC

Homology of Contig U35_21957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28019.1	468	2e-95	protein\|nucleoporin p58/p45, putative, expressed
Brachypodium v1_2	Bradi4g31937.1	468	2e-106
Arabidopsis v10	AT4G37130.1	513	4e-55	hydroxyproline-rich glycoprotein family protein \| chr4:17489567-17491773 FORWARD LENGTH=513