barSeed - Barley Seed Development Database

Probe CUST_17695_PI390587928

Source Contig U35_21959

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17695_PI390587928	Hv_44K_v2	GGTCTTTGTTTTGTACGCTCTAGCCAGTTTTGACCAAGAAAGAAAAGCTTGTTATGATGA	855	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.887	3.059	1.589	0.907	0.353	0.347
Raw	718.626	1716.019	799.036	681.972	98.558	105.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58445.2	3545	2e-24	34 - 93	100	60 / 60	minus	ABC16676
MLOC	MLOC_58445.1	3519	2e-24	56 - 115	100	60 / 60	minus	ABC16676
JLOC1	JLOC1_37971.2	3613	8e-25	3393 - 3452	100	60 / 60	plus
JLOC1	JLOC1_37971.1	3516	8e-25	3296 - 3355	100	60 / 60	plus
Harvest21	ABC16676	931	3e-25	856 - 915	100	60 / 60	plus	ABC16676
Harvest35	U35_21959	931	3e-25	856 - 915	100	60 / 60	plus

Contig Sequence (931 bp)

>U35_21959 931 Hv_44K_v2
GTTTGAAGGCAGAGCTTTTGTTTCCAGAGGAAAGAGCCTTCTGCCTCTCTTTGACGCAGT
CGGTGACCACAACCTCGACCGTGCATCACCTGTAGACGCCGATGATTCGACGATACCGGT
CCCCGCCGTGTTTGCGAAAGAGCAAGAGAGGCTGGCGATAATCGAGGAGGTCGATCATGT
GTACGAGAGGCTGCAAGCACTGGAGGCGGACAAGGAGTTCCTGAGGCACTGCATCAAGTC
CCTCAAGAAAGGAGACAAGGGCATGCACCTTCTCCAGGAGATCCTGCAGCATCTCCGCGA
GCTCCGGAGCGTGGAGCTTCATGGCAAGCACGCCGCTGATGATGCCATTGCCGCAAATTC
AGCATAGCAGATGAATCTACATATATATTAGATGTGATTTATAGTTGTTCGGCTATGGTG
AGCCGATCGACAGGAATGGTCCAAGTAGCAGTGGATCTATGATATGGTACCTCTCCCTTG
TGCAAGATAATGGCTTGTGTTCAAGGGAACGCTTTGCTCGCCTGGCCTGCGCTGGTCCAG
CATTGCGGGCTTTATGATGCGGTTGGTGGTGGCAGGAATCATTAGGGCCATCCGAAGCTT
TCACCAAGCTGAATCATGGTGCCAGCTTCGGAGGCATGCACACCACTTCGAAAGGACAGA
TGGAGATTGAGATAATCAGAAAAGGGTAAAGGTGGTCTGGATGTAGATGTGGTGGATTTT
TTTTCTCTACTACTATTTGTTTCCCTTTTCTTTCTTTGGGTTAAATTTTAGGTTTGTTTG
TGCAGAGGTGGAGAGCGTTCAAGTTTTTTGTGTTTTGTATGAGGTTGTAGGCTTGTAGCT
TGGTACGTGTGGTTTGGTCTTTGTTTTGTACGCTCTAGCCAGTTTTGACCAAGAAAGAAA
AGCTTGTTATGATGAAAAAAAAAAAAAAAGG

Homology of Contig U35_21959 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None