barSeed - Barley Seed Development Database

Probe CUST_17678_PI390587928

Source Contig U35_45917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17678_PI390587928	Hv_44K_v2	ACTGCCGGGCTTACATTCTTCGTTACAAAGATCGACAGTCTTAGTGGGATCAGATCTAAG	56	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.829	5.819	1.345	0.659	0.232	0.268
Raw	154.575	287.906	56.217	45.339	4.166	6.079

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80490.1	2027	2e-24	95 - 154	100	60 / 60	minus	ABC45316
MLOC	AK361347	1953	7e-23	1854 - 1913	98	59 / 60	plus	ABC45316
JLOC1	JLOC1_53592.1	2614	8e-25	103 - 162	100	60 / 60	minus
Harvest21	ABC45316	660	3e-25	57 - 116	100	60 / 60	minus	ABC45316
Harvest21	ABC22939	752	1e-23	650 - 709	98	59 / 60	plus
Harvest35	U35_45917	660	3e-25	57 - 116	100	60 / 60	minus
Harvest35	U35_5985	1944	1e-23	1842 - 1901	98	59 / 60	plus

Contig Sequence (660 bp)

>U35_45917 660 Hv_44K_v2
TTTTTTTTTTTTTTTTAACAAATTATGCTCGTGTTGAGGGTAAAACTGTTGTTTGGCTTA
GATCTGATCCCACTAAGACTGTCGATCTTTGTAACGAAGAATGTAAGCCCGGCAGTGATT
AAGTAATACAAAGTTCGCCCACAAAAAGAACCCAATACAAGAGAAGATAGGCACCACACA
AAACAATAAAACAATCTATACCAAGAAAAAGAAAATAACAGTAAAACACCACCAGTCCAC
CACCAAACTACATCATGCCGAACAGAGCCAGTTGTGTAAAAAAATTCTTCACGCGTGACA
AGGACATCGATGATGCCTTTCTCAAAGATCAAAAGTAATTAGAATTCTCTCATTCTTTAG
CTCATCAAAATTTTGACATGGCAGTTCTTCAAGTCTTATTGTTGTGTTGGAAGCCTGTCT
TCAAATACTCTCTCCTTAGCCTTGTCAGCCATCTTGTCCCATTTTGTAGTAGCAGTTATC
ACAGATAGGAGAGTGACCTGTGTAGCTCCACCAGCTAAATGCTGCCATCCACAGCCCCGA
GAAACACCTGAAAGGACTCCTTGGAGGCTGTCTGTAATAACTGAAATGGAAAGTACGGGC
ACCATTATGGTGACATAATCTATAACCTCCTCCTCATTGCTGAATGCAATTCCAATGAAG

Homology of Contig U35_45917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None