barSeed - Barley Seed Development Database

Probe CUST_17671_PI390587928

Source Contig U35_21965

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17671_PI390587928	Hv_44K_v2	TTCGTGTCTTGAGTTCGCCTGTCCTTGGTTATTTAAAAGAAAGATGTGATGATGAAGATA	1745	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369327	1862	9e-22	1805 - 1862	98	58 / 59	plus	ABC15315
JLOC1	JLOC1_11860.1	2022	1e-22	1816 - 1874	98	59 / 60	plus
Harvest21	ABC15315	1821	3e-25	1746 - 1805	100	60 / 60	plus	ABC15315
Harvest35	U35_21965	1821	3e-25	1746 - 1805	100	60 / 60	plus

Contig Sequence (1821 bp)

>U35_21965 1821 Hv_44K_v2
GGTTTTTCAAAAACCGAAAGGCATTTTCGGTATCATTGTATGATTGTAACGCTGTCTGAA
AATACCTACTGAGAATACCTAAGAAAAAGAAAGAAAATAATTACGTAGTTAATTTATTTG
CATGAATATTAGTTTTTATCATGTATGCAGACGAATTATCAAACTGAATTGTTTCAAAAT
TCTGCCCTTCAAAATAATACTGCTAATTCTACTGCAAGGAAATACAAAAAACTAATCTGG
TTTATTTTATTGTCATACAGCTGTTCCTGGTTTACCTCTTATTGGAAATCTGCACCAGTT
AAAAGAGAAGAAGCCCCATAAGACCTTTGCAAAATGGTCTGATATTTATGGGCCAATATA
CACCATAAAGACTGGGGCTTCATCTGTAGCTGTGCTCAACTCTTCTGAAGTAGCCAAGGA
GGCTATGGTTGCGAAATACTCATCCATATCTACTCGAAAGCTACCTAAAGCATTGTCAGT
GCTGACTCGTGATAAAACAATGGTTGCTACAAGTGACTACGGCGACTTCCACAAAATGGT
GAAGCGTTTAGTTATGTCGGGCATGTTGGGTTCTTCTGCTCAGAGACAATTTAGGGACAC
AAGAGACATGATGATGGACAACATGTTAAGCACTTTCCATACATTGGTGACTGACGACCC
ACATTCTCCTCTGAACTTCAGAGAAGTTTTCAAGGACGAGTTATTCCGCCTGTCCTTGAT
CCATAGTTTATGCGAGGATGTGGATTCAGTTTATGTGAAGGAGTTTGGGAGGGAGATATC
AAAGGATGAAATCTACCAGATCACTGTGGTAGACATGATGATGTGTGCAATCGATGTTGA
TTGGAGGGATTTCTTCCCATACCTCAGCTGGATCCCAAACAAAAGCTTCGAAACAAGAGT
TCATACCGCAGAATCCAGGCGAACCGCGGTGATGCAAGCCTTGATCCGTCAACAGAAAAA
GAGAATTGCGAATGGCGAGGCCAGGGCATCCTATCTGGACTTCTTGCTGGCAGAGAAGGC
ACTGACAGACGAACAATTGATGATGCTGGTGTGGGAGGCAGTCATCGAGGCTGCGGATAC
TACTTTGGTGACTACCGAGTGGGCAATGTATGAGCTTGCTAAAAACCCAGAAAAGCAGGA
TCGGCTCTACCAGGAGATCCGGGAGGTGTGTGGTGACGAGACGGTCACTGAGGATCATGT
GCCACGGCTGCCTTACCTCAGCGCCGTGTTCCATGAGACGCTCAGGCTCCATTCTCCTGT
CCCATTGGTGCCTCCAAGGTTTGTCCATGAGACCACCAAACTGGCCGGCTACGACGTCCC
AGCCGGCACTGAGATAGTCATCAACCTGTACGGGTGTAACATGAACAAGAAGGACTGGGA
GGAGCCGGAGGAGTGGAGGCCGGAGAGGTTCATGGACGGGAGGTTCGAGGCCGCGGACAT
GTACAAGACCATGGCGTTCGGCGCCGGGAGGAGGTCTTGCGCCGGGAGCCTCCAGGCGAC
GAGCATATCCTGCGCTGCCATTGCGCGCTTCGTGCAGGACTTCGCGTGGAGGCTCAAGGA
GGGCGACGAGGACAATGTGGACACCGTGCAGCTCACCAGCTACAAGCTACACCCGCTGTA
CGTGTATCTCTTGCCGAGGGGGAGGAAGTGAACTAAAGGCAGGTTTGGTTCGGTAATGAG
GTGCTGGATTTGCTCTTTACATACTTGGCCAAACAAGATGGCAGCATGATTACCTGAACA
ATTCGTTCGTGTCTTGAGTTCGCCTGTCCTTGGTTATTTAAAAGAAAGATGTGATGATGA
AGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_21965 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37364.2	506	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi1g37547.1	499
Arabidopsis v10	AT5G25900.1	509	\| Symbols: GA3, CYP701A3, ATKO1 \| GA requiring 3 \| chr5:9036073-9038278 FORWARD LENGTH=509