- Probe CUST_17670_PI390587928
- Source Contig U35_21966
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17670_PI390587928 | Hv_44K_v2 | CTTGCGTACATGTTGTGAGAAGAGCTATTATTATTGGAGTTGGAGATAAGATAAGATTGC | 446 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 6.985 | 5.605 | 1.466 | 0.872 | 0.857 | 0.817 |
| Raw | 58.964 | 78.640 | 16.437 | 15.661 | 4.177 | 4.614 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68442.1 | 831 | 2e-24 | 23 - 82 | 100 | 60 / 60 | minus | ABC24835 |
| JLOC1 | JLOC1_45284.1 | 940 | 8e-25 | 156 - 215 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC24835 | 534 | 3e-25 | 29 - 88 | 100 | 60 / 60 | minus | ABC24835 |
| Harvest35 | U35_21966 | 534 | 3e-25 | 447 - 506 | 100 | 60 / 60 | plus |
Contig Sequence (534 bp)
>U35_21966 534 Hv_44K_v2 ATCACAAGAAAGAAACCTGTAGCACCGAGCTAGGTGCGCGGATGCAGGGCGGGGAGAGCG CGCTGGGCGCGGCCAAGGAGGCGGGGGCGAACCTGGGCGCGTCGGCGTGGGCGGGCAAGG AGAAGACCATGGCCGTGGTGCAGGAGACGGTGGACAAGGCCAAGGCGCACGACGACCCGG CGGCGCAGGCGGAGGCCGAGGCCAGGAAGGAGGAGCGGGTCCTCGAGGTGGAGGCCGCCA AGCAGGACGCCTACCGCCACAACGCCGCCGTCGCCAAGGACGGCCGCGCCGCCGCCGTCG CCGCCGACCAGAAGGAGGCCGTCGCCGCCGACGAGGAGGCGGCCGTCTCCGCCTGACAAC CATGTCCGAAACCGAATCCTCATGTCGGAGATGAGATTGCTTTTATTCGATCGAGTGTAT ATATTGTATTTGTATTGTTTTGAGTGCTTGCGTACATGTTGTGAGAAGAGCTATTATTAT TGGAGTTGGAGATAAGATAAGATTGCTTTGAACGTGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_21966 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |