barSeed - Barley Seed Development Database

Probe CUST_17669_PI390587928

Source Contig U35_21967

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17669_PI390587928	Hv_44K_v2	GATTTACGTCTTGTTAGAAATCAATGGCTTCTATTGGATCCTGGAGCTGAATGCCTAATG	1363	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.232	0.869	1.085	1.056	0.665	0.877
Raw	43.715	44.083	52.904	75.882	17.388	25.320

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359848	3467	2e-24	2285 - 2344	100	60 / 60	plus	ABC12184
MLOC	AK365136	2852	2e-24	1931 - 1990	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.1	2978	2e-24	1615 - 1674	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.9	1874	2e-24	1341 - 1400	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.11	3757	2e-24	2109 - 2168	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.2	1896	2e-24	1574 - 1633	100	60 / 60	plus	None
MLOC	MLOC_37715.3	2492	2e-24	1623 - 1682	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.7	2231	2e-24	1404 - 1463	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.6	2733	2e-24	1415 - 1474	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.10	2483	2e-24	1168 - 1227	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.8	2676	2e-24	1346 - 1405	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.5	2739	2e-24	1411 - 1470	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.4	2080	2e-24	1540 - 1599	100	60 / 60	plus	ABC12184
JLOC1	JLOC1_24450.5	2757	8e-25	1398 - 1457	100	60 / 60	plus
JLOC1	JLOC1_24450.4	2750	8e-25	1391 - 1450	100	60 / 60	plus
JLOC1	JLOC1_24450.3	2848	8e-25	1489 - 1548	100	60 / 60	plus
JLOC1	JLOC1_24450.2	2759	8e-25	1476 - 1535	100	60 / 60	plus
JLOC1	JLOC1_24450.1	2888	8e-25	1529 - 1588	100	60 / 60	plus
Harvest21	ABC16165	1423	3e-25	1364 - 1423	100	60 / 60	plus
Harvest35	U35_21967	1423	3e-25	1364 - 1423	100	60 / 60	plus

Contig Sequence (1423 bp)

>U35_21967 1423 Hv_44K_v2
GACCAGCTTCACCCGCAAGGGTAGTCCAGTACGAAGCTCCTGATGTCGGTGCGGACGATG
CTTTAGGCATTTGGAGAATAGATGACGCTGATAACAGCTTCTACACACAGCCATTCAGAA
TCAAGTATGCTCGACAGGACATATATCTATCGGTTATGGTGTCTTTCAACATACTCAACG
GTGCAGAAGAGGGTCCAGCAGCTTCTGCTGTGATATTGAAGTACGAGTTAATATATGCCC
CAACACTGGAGAATGGATCTGATATCCAATCTTCTAGTGCTACATCTTCAGCTGCCGTAC
ATGAATTTAGGATCCCACGCAAAGCACTCCTGGGCTTACATTCATATTGTCCAGTTCACT
TTGATGCATTCCACGCGGTGCTTGTCGATCTGACATTGCATATAGTGTACCTGAAAGCTG
GTGCAAATAAATCATCATTGAAGATACACAGATACCAGATCAAGGTTTACGCCCAACAGC
ACATCAGATTGTCAAGGCATTATTGACTTCAAGGGAAATGTTACTTGAAGAATTGAAGAA
AATCAGTGGTGCTGTTGGCAAAACAATAGAAGATTTAGATGATGCTGACTTTAGTCTTGG
TAAATATGAGTCACTTCAGTCTTCAAAACCAGTCCATCCTGATTCTGGTAAAGTGTTCCC
TGTAACTACCAAGGGTGTTGGGCATTTGGCTGGCATCTTACATGACTTTCTGGAGAGACC
TAATGATGTCGTTGATGGCACTAGTGATGGTATGCTGTATACTCTTTCCAGTGAAGAGTT
GTTAGAATTGTTTATAACCGTGAGCAGCCAACTTTCACTTCTATGGAATGCATTCTTGAA
ATTTCATAGGATAAATAAAACTAAGATAATGGATTACTTGCGGGACATTTGGGCCGTTGA
CAGGAAAGCAGAATGGTCAATCTGGACTAATCACTCTAAAATCGAGATTCCACACCGCTA
TTTGCGGAGTATGAGTGATGACCCATCTTACCGTCACTCCCTCCTGAGAGTTTCTGGTTC
GAGGAAGTTTCATGAAGATCCTGTACAAAATTCTGCTTCACGGGCTGAGCTACACAGGAA
GAGCATAGCCCAAATGAAGATCAACACGAGGTCTGTTCAAGATATGCATATATATGCCGA
TCCTTCACGTGTCCCGGTTGTTCTTATAGAACAACATGTCATGGTTGTTCCACAACATGG
TTCAAACAAGGATTTCGCATCAAGTTCTTCAGAACAGAAGGATACTATTGTGCTACCTAA
ACTACAAGGAGAGTATTTGGCGCTGAAAAATATCAATGCTAAAAAAGGTGGACGCGTATT
ACGAGCTGTCATCTTTGTGCATGGATTTCAGGGACACCATTTGGATTTACGTCTTGTTAG
AAATCAATGGCTTCTATTGGATCCTGGAGCTGAATGCCTAATG

Homology of Contig U35_21967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06800.1	812	0.0	protein\|serine esterase family protein, putative, expressed
Brachypodium v1_2	Bradi4g41790.1	811	0.0
Arabidopsis v10	AT1G58350.1	794	3e-105	\| Symbols: ZW18 \| Putative serine esterase family protein \| chr1:21663131-21666827 REVERSE LENGTH=794