barSeed - Barley Seed Development Database

Probe CUST_17668_PI390587928

Source Contig U35_21968

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17668_PI390587928	Hv_44K_v2	AAACAGTATGTTTGCATTGCTTACGATTATAGTTATAGCCACTCTGGTGGTTGCTCTAAA	667	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.603	1.450	1.156	0.927	0.392	0.413
Raw	3143.447	4521.090	3101.010	3893.323	579.362	668.668

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364155	2286	2e-23	2226 - 2283	100	58 / 58	plus	ABC18581
MLOC	MLOC_20731.1	989	2e-23	842 - 899	100	58 / 58	plus	ABC18581
JLOC1	JLOC1_14374.1	1037	1e-23	827 - 884	100	58 / 58	plus
Harvest35	U35_21968	741	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (741 bp)

>U35_21968 741 Hv_44K_v2
TCAGTTAGAAACAAGTTTGTTTCTGGTGATGATGACATTCCAAAGCGAGATGAGATTGGT
GAAAGACGCCGAAAGCATGAACTACGTGTTCTTGCTCGTATAGGAACCAATTCACGTGAA
GATGATGAGTTGCCAGAAGATGGTGATCATACTGAAGAGAAGCTCAGCCAATCCAGTGAG
GAAGATGGCGATGATTATGAATCTTCAGGGTCTGAAGATGAATTCTACAAAGATATCAAG
AGGCAGAGGACCGAAAAACGCCTGGGCAAAGAACAGAGCACCCCTGTTACTGAGCTGGAG
GAAGAAAGCGAAGGAGATGGCAAGAGGAAGATTTCACGGCAGATCGAGAAGAACCGAGGG
CTCACTCGCTCCAGAAACAAGAAACTCAAGAATCCACGGAAGAAATACAGGATTAAGAGT
GATAAACAGAGTAAAAGGAGGCAAGGTCAAGTGCGCAGCGCGAAGAAGCCCTCTGGTCCG
TATGGAGGTGAACTGTCTGGCATCAATGCAAACGTCAGTCGTAGTGTTCGGTTCAAGAGT
TGATCGCATCGGCCTTATCGTGAATGTATGCAAATTTTGTTTGGTTTGGTTTAGTTCGCA
TGGGGCGTTTACATTTCATCTGATGATCATTTGTGTTTGTAGTAGTAAACAGTTTTCCGT
GGAAAGAAAACAGTATGTTTGCATTGCTTACGATTATAGTTATAGCCACTCTGGTGGTTG
CTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01510.1	646	9e-71	protein\|sas10/Utp3 family protein, expressed
Brachypodium v1_2	Bradi2g13337.1	635	4e-82
Arabidopsis v10	None