barSeed - Barley Seed Development Database

Probe CUST_17665_PI390587928

Source Contig U35_33943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17665_PI390587928	Hv_44K_v2	TGCCACTCAAGCTGGTCAATCAATTCCTTTCATGAACCCATCTGTGTCAAATACTGTTCC	230	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57581.3	4867	2e-24	4155 - 4214	100	60 / 60	minus	ABC06577
MLOC	MLOC_57581.2	4877	2e-24	4165 - 4224	100	60 / 60	minus	ABC06577
MLOC	MLOC_57581.1	5318	2e-24	4606 - 4665	100	60 / 60	minus	ABC06577 ABC48272
JLOC1	JLOC1_37343.2	6342	8e-25	1710 - 1769	100	60 / 60	plus
JLOC1	JLOC1_37343.1	6420	8e-25	1788 - 1847	100	60 / 60	plus
Harvest35	U35_33943	294	3e-25	231 - 290	100	60 / 60	plus

Contig Sequence (294 bp)

>U35_33943 294 Hv_44K_v2
CAGAATAGTGTGTTCCCGTAGATCAGATATCAAAATTACGATCCAAATACTACAAAGAAG
GGGCTGCTTCACCTAAGTAGTTGCACAACCGCAGCAAGTCAGGGTGTTGCAACTCAGCCT
ATGGTTTACTATCCTAATCCACAACAGACCTCATATAACCAGTCAGGTCCGTATTACTCC
AGTACTGCTGGTATTGTTCCCACTGGATCACAGGGCAGATTTGGTTATGCTGCCACTCAA
GCTGGTCAATCAATTCCTTTCATGAACCCATCTGTGTCAAATACTGTTCCCACC

Homology of Contig U35_33943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None