barSeed - Barley Seed Development Database

Probe CUST_17662_PI390587928

Source Contig U35_19651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17662_PI390587928	Hv_44K_v2	TTTGTGTTGGACAACAGATCGTGCAGATTCTATTTGAATCCTGATACTTGCTGTAAAAAA	897	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.057	8.580	1.576	0.707	0.390	0.417
Raw	247.378	247.110	38.906	28.841	2.917	4.795

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76824.1	2765	3e-22	1697 - 1752	100	56 / 56	minus	ABC08384 ABC11681
MLOC	MLOC_76824.2	1843	3e-22	959 - 1014	100	56 / 56	minus	ABC08384 ABC11681
JLOC1	JLOC1_51243.1	1651	1e-22	1075 - 1130	100	56 / 56	plus
JLOC1	JLOC1_51242.1	2199	1e-22	882 - 937	100	56 / 56	minus
Harvest21	ABC11681	968	3e-25	898 - 957	100	60 / 60	plus	ABC11681
Harvest35	U35_19651	968	3e-25	898 - 957	100	60 / 60	plus

Contig Sequence (968 bp)

>U35_19651 968 Hv_44K_v2
TCCCATCTGCTCCGCTCCGCTCGCCGTACGGTCTCACCCATCACACACACACACAGGCAG
CCTACGTATCACGCCGGTGCTCGCCATGGCCACGTTCTTGGGCAGCACCCCGGCCTTCCT
CGCCCGCCCGGCCGCCAAGCCGCAGGTCTCGTGCGCGCCGCCCTCGCGCCCGCCCAGCGC
CCAGCCGCCGTCCGACCAGCCCCCACCGCCGCCACAGCAGCAGCAGCAAGAGCCCATGCA
GGCGCAGGCGAGGGCGCCGGCGCCGAAGCGCGCGGCGACGTCGGCCGACTCGACGGACTG
GGTCGCGTCGTCGCTGACCCGGCGGTTCGGCATCGGCGCCGGGCTGGCGTGGGTCGGCTT
CCTGGCCTTCGGCGTCGTGTCGGAGCAGCTCAAGACCCGCTTCGAGGTCGCCCAGCAGCA
GGCCAACACCAAGGATGTGGAGGAGCAGCAGGAGGTCGTCCTGCCCAATGGAATCCGGTA
CACCGAGATGCGGGTGGGCGGCGGCGACGTGCCGCGGCCGGGCGACCTGGTGGTGATCGA
CCTGCAGGGGCGGGTGTCCGGCGGCGGCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGA
CGGGAAGCGGCCGCTGGCGCTCGTCATGGGCTCCAGGCCCTACACCAGGGGGATGTGCGA
GGGCATCGAGTACGCGCTGCGGTCCATGCGGAGCGGCGGCAAGCGGCGCGTGGTCGTCCC
GGCGAGCCTCGGCTTCGGGGAGGACGGCGCCGACTTCGGGGACGACGGCACGCAGGTGCC
CCCCGGGGCCACGCTCGAGTACGTCGTGCAGGTCGACAAGGTGTCCATCGCGCCGGCGTG
AGCCTCTCCGGCGTGCCGGACGTCAGTAGATAGGTGTTCGACATTATGCTGTTTCAGTTT
GTGTTGGACAACAGATCGTGCAGATTCTATTTGAATCCTGATACTTGCTGTAAAAAAAAA
AAAAAAAA

Homology of Contig U35_19651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50080.1	253	5e-107	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	Bradi1g11160.1	255	5e-109
Arabidopsis v10	AT1G18170.1	247	8e-79	FKBP-like peptidyl-prolyl cis-trans isomerase family protein \| chr1:6254291-6255507 FORWARD LENGTH=247