barSeed - Barley Seed Development Database

Probe CUST_17657_PI390587928

Source Contig U35_19655

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17657_PI390587928	Hv_44K_v2	AGATGCTACGTAGTACTGTATGTAGTATCAACATGTAGTGATAACGAAGGCGAGGCCGTG	706	GeneList: darkolivegreen MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.113	0.158	1.098	1.847	1.405	2.070
Raw	3.318	9.417	66.672	205.417	45.931	76.636

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78133.1	1160	2e-24	898 - 957	100	60 / 60	plus	ABC12093 ABC12094
JLOC1	JLOC1_52077.1	1067	8e-25	912 - 971	100	60 / 60	plus
Harvest21	ABC12093	863	3e-25	707 - 766	100	60 / 60	plus	ABC12093
Harvest35	U35_19655	863	3e-25	707 - 766	100	60 / 60	plus

Contig Sequence (863 bp)

>U35_19655 863 Hv_44K_v2
GCCTCAACGGCGACCTGCTCGCCGCTGCGGGCCCGTCACTGTACAGACAAGGCGTCGGCT
GCGGCGCGTGCTTCCAGGTGCGGTGCAAGGACGAGGAGCTCTGCAGCACCGCCGGCGTGA
AGGTCGTCGTCACGGACCGCGCCAGCACGAAGACGAACGACACCGAGCTCGTGCTCAGCA
GCCCGGCGTTCGCCGCCATGGCCCGCCCCGGCATGGCCGCGCGGCTAGCCAAGCTCGGCG
CCGTCGAGGTCGAGTACAAGAGGGTGCCGTGCGAGTACGAGGGCAAGAACCTCTCGGTGC
GGGTGGAGGAGCGGAGCCGGGCGCCCAGCGAGCTGGCCATCACGATCCTCTACCAGGGCG
GCCAGACGGACATCGTCGAGGTCGACGTCGCGCAGGTCGGATCGTCGTCGAGCTGGAGTT
CGCTGACACGCGACCACGGGCCGGCGTGGAGCACGAGCCTGGCGCCGCCGGGGCCGCTGC
AGCTCAGGGCGGTGGTGACCAGCGGGTTCGACGGGAGCTGGGTCTTTGCCGAACATGAAG
TCCTGCCGCGCCAGTGGCACGCCGGCGAGGTCTACGACACCGGCGTCCAGATCACCAGCA
TCGCGCAAGAAGCCTGCTTCCCCTGCGACACGCAGGAGTGGAAGTGACGGGTGACGGTGG
AGAAACATGCATGAGCTGCACTGCTGCAGCCTGCAGCTAAGGTGTGAGATGCTACGTAGT
ACTGTATGTAGTATCAACATGTAGTGATAACGAAGGCGAGGCCGTGGCCTGAATCGCCGG
ACCTGCAAAATACTACTCGATGAATAACGTCGCATGCATGTCGGGGCCCCGTTGGTTTCG
GCAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04020.2	240	1e-95	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g76260.1	270	1e-101
Arabidopsis v10	AT3G45970.1	265	4e-68	\| Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 \| expansin-like A1 \| chr3:16896238-16897189 FORWARD LENGTH=265