barSeed - Barley Seed Development Database

Probe CUST_17656_PI390587928

Source Contig U35_19656

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17656_PI390587928	Hv_44K_v2	CTGACGTGTGAGATACTAGTAGTAGTATGTACGAGTAGCAACCATGAAGCGATAATGAGA	811	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67134.1	1414	6e-24	556 - 614	100	59 / 59	minus	ABC12093 ABC12094
MLOC	MLOC_67134.3	1542	6e-24	69 - 127	100	59 / 59	minus	ABC12093 ABC12094
MLOC	MLOC_67134.4	1964	6e-24	2 - 60	100	59 / 59	minus	ABC12093 ABC12094
MLOC	MLOC_67134.2	1983	6e-24	556 - 614	100	59 / 59	minus	ABC12093 ABC12094
JLOC1	JLOC1_44285.1	1247	3e-24	548 - 606	100	59 / 59	minus
JLOC1	JLOC1_44286.1	2030	3e-24	1404 - 1462	100	59 / 59	plus
Harvest35	U35_19656	871	3e-25	812 - 871	100	60 / 60	plus

Contig Sequence (871 bp)

>U35_19656 871 Hv_44K_v2
GTGCTTCCAGGTGCGGTGCAAGGACGAGGACCTCTGCAGCACCGCCGGCGTGAGGGTCGT
CGTCACGGACCGCGCCAGGTCGAAGACGAACGACACCGACCTCGTGCTCAGCAGCCCGGC
GTTCGCCGCCATGGCCCGACCCGGCATGGCCGCGCGGCTCGCCAGGCTCGGCGCCGTCGA
CGTCGAGTACAAGCGGGTGCCGTGCGAGTACAAGGGCAAGAACCTCTCGCTGCGTGTGGA
GGAGCGGAGCCGCGCGCCGAACAAGCTGGCCGTCACGCTGCTCTACCAGGGCGGCCAGAC
CGACATCGTCGCCGTCGACGTCGCGCAGGTCGGGTCGTCGTCGAGCTGGAGGTCCCTGAC
ACGCGACCACGGGCCGGCGTGGAGCACGAGCCTGGCGCCGCCGGGGCCGCTGCAGCTCAG
GGCGGTGGTGACCGGCGGGTACGACGGGAAGTGGGTCTGGGCCGACCGGGAGGTCCTGCC
GCGCGGGTGGCGCGCCGGCGAGGTCTACGACACCGGCGTGCAGATCACCGACGTCGCCCA
AGAAGCCTGCTTCCCCTGCAACGCGCAGGAGTGGAGGTGAGGTGACCACCGACGACGACG
AGGCAAGCCAAGAGGAAGAGCTAGGCTCCAAAATCATGGCTGGGCATCGAACGAAATGGC
AAGCCTCGTCACTGCTGCTGCCCGTTTCGGCTTGGCTTGGAATTGCAATTGGAAGGATTG
GTAGATAGATAAAGATTAGTAACTGACGCAGAGACACGTTGAGTCCTTGTTGCTTATCCA
ACCCTTGTGGACAAACGTGCATGAGCTGCAGCTGACGTGTGAGATACTAGTAGTAGTATG
TACGAGTAGCAACCATGAAGCGATAATGAGA

Homology of Contig U35_19656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04020.2	240	5e-91	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi1g76260.1	270	4e-94
Arabidopsis v10	AT3G45970.1	265	5e-66	\| Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 \| expansin-like A1 \| chr3:16896238-16897189 FORWARD LENGTH=265