barSeed - Barley Seed Development Database

Probe CUST_17654_PI390587928

Source Contig U35_19658

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17654_PI390587928	Hv_44K_v2	AATAACACTTCTACTGTAGTTAACTGAAGAAGCTGGCACCACGCATTGTCGCCAGATCAG	1542	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.780	1.353	1.254	0.913	0.379	0.354
Raw	165.185	199.891	163.310	181.184	27.112	27.574

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66349.1	1159	7e-23	1043 - 1102	98	59 / 60	plus	ABC13913 ABC13914
JLOC1	JLOC1_43709.1	2008	4e-23	1044 - 1103	98	59 / 60	plus
Harvest21	ABC13914	633	3e-25	69 - 128	100	60 / 60	minus	ABC13914
Harvest35	U35_19658	1670	3e-25	1543 - 1602	100	60 / 60	plus

Contig Sequence (1670 bp)

>U35_19658 1670 Hv_44K_v2
GGGCCGTTGCACAAGTATTTTCTTCAGTGTACTNTCAGTGCATGGTCGAACAAGTCATAT
TTTAAACCACTTGTTTTCAGCAGTATTGTTCTGTTCTTGGGTAATGTCTGCTATGCAATG
GCTTACGATACAAAGTCCCTGACGGTCCTTATTGTTGGCCGCCTACTCTGTGGGTTTGGT
TCAGCCAGAGCTGTCAATCGCCGGTACATTAGTGATTGTGTCCCTGCAAGGATACGTATG
CAAGCTTCAGCAGGGTTTGTAAGCGCAAGTGCACTTGGCATGGCTTGTGGGCCAGCGCTG
GCTGGTTTACTTCAGTGGAGATTTAAAATCTACATGGTTACATTCAGTCAGTCGACTCTA
CCTGGTTGGTTGATGGCAGTTGCATGGCTACTGTATTTAGTTTGGCTATGCATCTCTTTT
AAGGAACCAAATCGTTCTACTGAGGCAGATGATACCCCACATAATCGTGCTTCTGGGCAA
AGTGTGGATATTGGGCAAGTTGAAAATGGACTTGCACAACCATTGCTTGGAGATTCTGAA
AGCAAACAAATCGAAGATGATGATGATGATGAAGAAGATGGCAGTGAAGAATCTGTACAG
GGTTCTCGCGGGCCTGCAACTTCGATTGGTTCAGCGTACAGACTGCTCACTCCATCAGTA
AAGGTTCAATTGTTGATATATTTCATGCTCAAATACGCGATGGAGATTTTACTTTCTGAA
TCAAGTGTTATCACCAATCACTATTTCAATTGGAATACAAGTTCAGTGGCAATATTTCTG
GCAATTCTTGGGTTGACAGTGCTTCCTATTAATGCTGTTGTTGGAACATATATCAGCAAC
ATGTTTGAGGACAGGCAACTCTTGATGGCTTCTCAAATTACATTGCTAGTAGGCATTATT
TTCAGCTTCAAAGTCACGAGTACATACTCCGTCATCCAGTATGTTGTCTCAGCACTCATT
ACATTTGTGTCTGCTGAAGTTCTTGAAGGCGTCAACCTTTCCCTTCTGTCGAGTGTGATG
TCTTCCCGCCTATCCCGGGGCACATACAACGGTGGCCTCCTCTCGACGGAGGCTGGCACC
CTGGCGAGGGTGGTGGCCGACTGCACCATCACAGCTGCGGGGTACCTGGGAATTGGGAGC
CTCCTCAATGTCACCCTGCTGCCCTCCCTGGTGATCTGTGCCGCATCAATTGCATGCACC
TTCTTGACCTACAACTCCCTCTTCTAAACTGCAACGATTGATCGCCACTGTACGTGTTCT
CACCATCCGTTCCAGGTTGGATAATTCGATAGCTGGCTGCTGGCCGGCTTTGATTCTGTG
GTTGCCCGAAGGGACAATCGTACATGCCGGTCGGTTCAGTCAGTGCAGCATAATCATGTA
CCCGGTGCAGTCTTGGGTCCTGCAAAATTTTGATCGGTTTTGGTCTGTGATCATGAGAAA
ATTCACTTTTCTGGCGCTTGTGAATGTAATCTGGTTTCCTGAACTTGAACTTGGCCTGAA
ATGTGTTCCTTGGCGAGTGATACCAGTTGCGTTGCTGAAGAAAATAACACTTCTACTGTA
GTTAACTGAAGAAGCTGGCACCACGCATTGTCGCCAGATCAGGCTCATCGTTGACCGTGC
GATCTTTCGTCGGACGGCAGCTTAGGGTTGCTCCGAGTATAACACATCCA

Homology of Contig U35_19658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03860.1	699	0.0	protein\|uncharacterized membrane protein, putative, expressed
Brachypodium v1_2	Bradi1g49790.1	700	0.0
Arabidopsis v10	AT1G63010.5	708	1e-167	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein \| chr1:23347972-23351026 REVERSE LENGTH=708