barSeed - Barley Seed Development Database

Probe CUST_17638_PI390587928

Source Contig U35_21978

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17638_PI390587928	Hv_44K_v2	TTGCATGTTCTTGGTAGTTATTGATCGCAAGGTGTATAACATTCCAAGAATAAACATTGG	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16682.4	1922	2e-24	1238 - 1297	100	60 / 60	minus	ABC17479 ABC17956 ABC47518
JLOC1	JLOC1_11510.1	788	8e-25	653 - 712	100	60 / 60	plus
Harvest21	ABC17479	676	3e-25	582 - 641	100	60 / 60	plus	ABC17479
Harvest35	U35_21978	683	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_21978 683 Hv_44K_v2
GGCCTCTTTGGTCTCTCCATCCCTCGTTCTTCTCTGCCCGTGCGGCGTCGGCTAGATCGC
GGGCTCCGGCGACGGCGGTTGAAGGGCGACGGCTGCGGCAGGGCGTAGGAAACCCAGTTT
TTTTTTAATCTCAAACCAAGACTAGGTTCCTATAACTTCTGAAGAAATGGAAATGGGTGA
CAAAGCAGTCGGTCTTGTGTTGACCATGACGAGTTTATCCATTTTTACCTACTACACTTT
CTGGGTCATAATCTTGCCATTTGTTGACGATGATCATTTTGTCCACCAATACTTTCTACC
TCAAGAATACGCCATCTTCATCCCTGTGTTTGCCGGCGTCGTGCTACTTTCATTCCTAAG
TATATTCATCGGTCTTGTCATGCTGAAGTCAAAGAAAAAGAAGAAGGCTGCTTGATGGAT
TTCGCGACCCCCCCCCCCCCCCCATTCTTCCAGTGGAATTTCTGGTTTCCTTATGGATAG
TAGACAGGTTTTGTGGATGATCGTATTTCATTGAATCGCCTTCACTTGTGATCTAAGGAT
TTCTCATTGCACTTATGTCTTCAATTAGATCTAACTGGCATTTGCATGTTCTTGGTAGTT
ATTGATCGCAAGGTGTATAACATTCCAAGAATAAACATTGGTCAAATATCAAGTATTGTT
ACATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None