- Probe CUST_17636_PI390587928
- Source Contig U35_33950
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17636_PI390587928 | Hv_44K_v2 | CGACACATTGAAGATATTCACTGAAGAAGATCTGAAGAAGGCTACAAACGATTTTGACAA | 98 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.916 | 0.764 | 0.712 | 0.957 | 1.265 | 1.171 |
| Raw | 3.070 | 2.991 | 4.200 | 9.929 | 3.902 | 4.014 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252642.1 | 2608 | 6e-24 | 1336 - 1394 | 100 | 59 / 59 | plus | ABC13383 ABC30738 |
| JLOC1 | JLOC1_41292.2 | 2907 | 8e-25 | 1385 - 1444 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_41292.1 | 3038 | 8e-25 | 1516 - 1575 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9350.2 | 2740 | 8e-25 | 1532 - 1591 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9350.1 | 2735 | 8e-25 | 1527 - 1586 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33950 | 390 | 3e-25 | 99 - 158 | 100 | 60 / 60 | plus |
Contig Sequence (390 bp)
>U35_33950 390 Hv_44K_v2 TCTGAGTATCAGAAAAGGAAGCTTGCCAAAGAGAAGGACAAATTCTTTGATCAGAATGGT GGCCAAATATTATATCGCCAAATTATGTCAAAACAAGTCGACACATTGAAGATATTCACT GAAGAAGATCTGAAGAAGGCTACAAACGATTTTGACAAGAGCAGAGAACTTGGCAGGGGT GGTCATGGCACTGTCTACAAGGGCATTCTGAAGGATAACAGGGTAGTGGCCGTGAAACGC TCAAAGATAATGAATGTGGCCGTTTGGAATGAATTCATAGACCAGTATGGGGACTTCTAC CTCCAAGCAGCACCCCAGAAGCCTGACCACATTGCGGTGGTTGGTCTGTGAAAGAATAAT AATCTCCTGCACGAATTCATCAGTTTCGGC
Homology of Contig U35_33950 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |