- Probe CUST_17630_PI390587928
- Source Contig U35_33957
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17630_PI390587928 | Hv_44K_v2 | GATGAGTTGACAAAGAAAGGAAGCATGCTTTTCTTTTTCTGTATGTGAACTACGATGAAA | 50 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.068 | 1.774 | 1.045 | 0.958 | 0.386 | 0.375 |
| Raw | 633.038 | 886.513 | 446.048 | 658.567 | 89.853 | 96.586 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372637 | 600 | 2e-24 | 386 - 445 | 100 | 60 / 60 | plus | ABC28802 |
| MLOC | AK358071 | 656 | 2e-24 | 408 - 467 | 100 | 60 / 60 | plus | ABC28802 |
| MLOC | MLOC_16235.1 | 1546 | 2e-24 | 320 - 379 | 100 | 60 / 60 | plus | ABC28802 |
| JLOC1 | JLOC1_11170.1 | 435 | 8e-25 | 109 - 168 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28802 | 603 | 3e-25 | 322 - 381 | 100 | 60 / 60 | plus | ABC28802 |
| Harvest35 | U35_33957 | 264 | 3e-25 | 51 - 110 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_29495 | 603 | 3e-25 | 322 - 381 | 100 | 60 / 60 | plus |
Contig Sequence (264 bp)
>U35_33957 264 Hv_44K_v2 CCCTCCAGAGCATGCTCGAGCGGCCGCTATCAAACATCATTTATTAAAAATTTCATCGTA GTTCACATACAGAAAAAGAAAAGCATGCTTCCTTTCTTTGTCAACTCATCCTGAAAGACT AGTAATCTCCTGGCTCCGTTGGCAGGTCAGCATCATACTCCATCAATTTCAGCTTTCCCA AGTTGGTCTTCATCTAGTTTCGTCTTTCCCTTCCGTGAGCCACCCGAGGCCTCGGCCAGG CACGGCGAGCATAGACGTCATCCG
Homology of Contig U35_33957 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |