barSeed - Barley Seed Development Database

Probe CUST_17628_PI390587928

Source Contig U35_44510

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17628_PI390587928	Hv_44K_v2	GGGTCCATAACCATTCCTCCCTATGCCAACCCCCAGAAGATGCAGGCTCACCTCATCTTC	5	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76930.2	2110	2e-23	1257 - 1314	100	58 / 58	plus	ABC03965 ABC03966
MLOC	MLOC_76930.1	2178	2e-23	1278 - 1335	100	58 / 58	plus	ABC03965 ABC03966
JLOC1	JLOC1_51306.2	1940	1e-23	869 - 926	100	58 / 58	plus
JLOC1	JLOC1_51306.1	2247	1e-23	1176 - 1233	100	58 / 58	plus
Harvest21	ABC42321	193	3e-25	6 - 65	100	60 / 60	plus
Harvest21	ABC03965	858	4e-24	801 - 858	100	58 / 58	minus	ABC03965
Harvest35	U35_44510	193	3e-25	6 - 65	100	60 / 60	plus
Harvest35	U35_15661	858	4e-24	1 - 58	100	58 / 58	plus

Contig Sequence (193 bp)

>U35_44510 193 Hv_44K_v2
AGGAAGGGTCCATAACCATTCCTCCCTATGCCAACCCCCAGAAGATGCAGGCTCACCTCA
TCTTCCCCGGCACTCCCCGGTCCATCTTCGCCTACTTCCGCGGCCTCTTCTACGACATGG
GCAACGACCCCGAGGGCGGCTACTACGCCAGGGGCGCGCGGGCGTCGGTGTGGGAGAACT
TCAAGGACAACCC

Homology of Contig U35_44510 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None