barSeed - Barley Seed Development Database

Probe CUST_17627_PI390587928

Source Contig U35_18248

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17627_PI390587928	Hv_44K_v2	AGGTAACCTATCTAGAACCAAAGCAATGATCAACAGTGAATTGGTCTCCTCATCAAAAAA	1510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19421.1	1140	9e-22	819 - 873	100	55 / 55	plus	ABC08885 ABC08886
JLOC1	JLOC1_13465.1	779	5e-22	534 - 588	100	55 / 55	plus
Harvest35	U35_18248	1581	3e-25	1511 - 1570	100	60 / 60	plus

Contig Sequence (1581 bp)

>U35_18248 1581 Hv_44K_v2
GGCTCTACGGCGAGGCCGGGGACCGGCAGTCCGTGTGGATGAGCCACGGCGACGAGGTCG
TCAGGCTGCCCGAGGGGTTCGAGGTCGTCGCGCGCAGCGTGCAGGGCGCAATCGCCGCCA
TCGAGCACCGGGAGAAGCGCTTCTATGGCCTCCAGTACCACCCGGAGGTGACACATTCGC
CCCAAGGGATGGAAACGCTGCGCCACTTTCTGTTTGATGTTTGTGGGATTAAAGCCGACT
GGAAGATGCAAGATGTGCTGGATGAGGAAATCAAGACCATCCAAAGTATGGTTGGGCCCG
ACGAACATGTGATTTGCGCGTTATCAGGAGGAGTTGATTCAACAGTTGCAGCCACTCTTG
TTCATAACGCGATAGGGGATAGGCTCCACTGTGTTTTTGTGGACAACGGTCTATTGAGAT
ACAAGGAGCAGGAACGAGTTATGTCAACCTTCAATAGCGACCTGCACCTTCCTGTCACAT
GTATTGATGCCTCGGAGAAATTTCTTAGCGAGTTAAAAGGAGTCAAAGACCCAGAGACGA
AAAGAAAGATTATTGGCAGGGAGTTCATAGTTGTATTTGATGAATTTGCTCGCATGTTGG
AACAGAAGCTAGGAAAAAGACCCGAGTATTTGGTTCAAGGAACATTATACCCTGATGTGA
TTGAATCATGCCCACCACCTGGGAGTGGGAGGACACATTCGCACACCATCAAAAGCCATC
ACAATGTAGGTGGTCTTCCTAAAGATATGAAGTTGAAGCTCATTGAACCACTGAAGCTCC
TATTTAAGGATGAGGTTCGGAAGCTGGGAAGTATCCTGAACGTCCCAGAGTCATTCTTAA
AGCGACATCCATTTCCTGGGCCTGGTCTTGCTGTACGTGTCATAGGCGATGTTACAGCAG
GCAATGCTTTGGAGGTTCTTCGTCAGGTGGATGAGATATTTATTCAAGCCATTAAAGATG
CAGGCCTCTATGATGAAATTTGGCAAGCTTTTGCTGTGTTTTTGCCTGTCCAAACAGTTG
GGGTCCAGGGTGACCAGAGAACTCACTCCCATGTGGTTGCTTTAAGGGCAATTACCAGTG
AGGATGGCATGACTGCAAATTGGTATGATTTTGAGCGCCAGTTCCTGGTTGATGTGGTGA
AGAAGATCTGCAATAACGTGCGGGGCGTCAACCGTGTTGTCCTGGACGTAACATCGAAGC
CACCAGCGACGGTGGAGTGGGAATAGGATGGTGGTGATTTGATGGTGCAATAACGGGCTG
GGAATTGCAAAAATCATGCTCTGATGCTGTTGCAACGCTGCAGTGGGTTTAGTGCTAAAT
TTGCAGTTCAGTTATTTATCTGTAGGTTATGCTTAGAAAAATATGGATCTAATATGCTTA
GACAAATATGAATCTATTGTGTATCTTTTATGCCTTTTGATTTTTCTACCCCCATCCTTC
TAAAATTGATTATATATGGGAGTAGCTGATTTTCATTTTACATGCGCTAGGAATTTCTTT
GATCTTGGGAAGGTAACCTATCTAGAACCAAAGCAATGATCAACAGTGAATTGGTCTCCT
CATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g23730.1	545	protein\|class I glutamine amidotransferase, putative, expressed
Brachypodium v1_2	Bradi3g20590.1	543
Arabidopsis v10	AT1G63660.1	534	GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative \| chr1:23604127-23607080 REVERSE LENGTH=534