barSeed - Barley Seed Development Database

Probe CUST_17617_PI390587928

Source Contig U35_20560

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17617_PI390587928	Hv_44K_v2	TAAAACAAGAGTATTCTGGAACGAGAAATCTACGGTTATGGGCTACGGTAGCGGAGTTGG	1403	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.807	1.971	1.171	0.866	0.420	0.463
Raw	350.636	602.129	311.887	362.560	62.418	73.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357441	2087	2e-24	1981 - 2040	100	60 / 60	plus	ABC14247
JLOC1	JLOC1_2460.1	1378	8e-25	1016 - 1075	100	60 / 60	plus
Harvest21	ABC14247	1502	3e-25	40 - 99	100	60 / 60	minus	ABC14247
Harvest35	U35_20560	1502	3e-25	1404 - 1463	100	60 / 60	plus

Contig Sequence (1502 bp)

>U35_20560 1502 Hv_44K_v2
GGCAGAAATAGTTAAGGGCTCCACTCCGAAGGAGAATGCTGTGACTACTGTCAAGATAAA
TAAGACATCACACCAGAAGGAAACAATTGTTGTCAATGGTGCTGTTGAAAAGGCGGGGTT
GGGTGATGGTGCAGAGCCTTGGACTGTACTTGTACACAAGAAGCCACAGCCTGAGTGGAT
TCCATACAATCCTAAGGTCATGAGGCCTGCACCCCTTAGCAAGGATACAAGGGCACTTAA
GATTCTATCGTGGAATGTCAATGGATTGAGAGCTTTAGTCAAATCTAGGGGCTTCTCCAT
TCATGAGTTAGCACAGAGGGAGGATTTTGATGTGCTATGCCTGCAAGAAACGAAAATGCA
GGAGAAAGATGTTGAAGTCATTAAGGAAAGTCTACTTGAAGGGTACACCAATAGTTTCTG
GACATGCAGTGTGTCAAAGCTTGGCTATTCGGGGACTGCCATAATTTCACGGGTCAAACC
ACTTTCTATCAAGTATGGGCTTGGTGTACCAGATCATGATACAGAAGGGAGGATTGTGAC
GGTGGAATTTGATGATTTTTACTTGCTAACTGCCTATGTACCCAATTCCGGTGATGGTCT
TAAAAGATTGACTTACAGGGTCACGGAATGGGATCCATGCCTTGGTAACTACATGAAAGA
ATTGGAAAAGTCGAAACCTGTCATACTAACTGGTGATCTTAACTGTGCGCATCAGGAGAT
TGATATACACGATCCTGCTGGAAATAGTAGAAGTGCCGGCTTCACAAAAGAAGAAAGGAA
ATCATTCGAGACTAATTTTCTGTCCAAAGGGTTCGTGGATACATTTCGGAAACAGCACCC
CGATGTTGTTGGATATAGCTACTGGGGTTATAGGCATAATTGCCGGAAGACTAATAGAGG
TTGGCGCCTGGATTACTTTCTCGTGTCGGAGTCCATCGCAGAAAGAATCCACGATTCATA
CATCCTCCCAGACGTTTCTGCCAGTGACCACAGCCCGCTTGGCCTCATACTGAAGCTCTA
GGTGAAAGGCTGAACCCCCGGCCCATGCGAACTTGCAATCTAACTTCTGGGGTTGTTGGT
CTGCAGCGTTGCTTGTTCCGCTTTGCGCAGATGATTTTGCGTCAGTGAAGCAATAGGTAT
AGTACTCTAATGGATGTTGGCTGGTGGTCATTGTACCAATCCAGGTTTGTGGCGTTATGG
TCCAGCATGAGCGTTTTGGGGAAATCCTTGTCCCGTCTATGTGTTCTGACTGTTCCTTCA
GACTTAGCATGAAACTGTTCCTCCGATAGTCTGGGTCAGATATGCTGTGTTGTGTTGTTC
GAAGCAATTTTCTCAAGACTGAAATCTGTAGAGTATAGGCTACAGAGTGCCTATCAGATG
AGTCATGAGTGTGGAACATGTGCTAAAACAAGAGTATTCTGGAACGAGAAATCTACGGTT
ATGGGCTACGGTAGCGGAGTTGGCCATCCAACCCGGTGCATCAAATGTCCGTGGCTGGGT
CG

Homology of Contig U35_20560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58680.1	500	0.0	protein\|apurinic endonuclease-redox protein, putative, expressed
Brachypodium v1_2	Bradi2g52540.2	517	0.0
Arabidopsis v10	AT2G41460.1	536	7e-156	\| Symbols: ARP \| apurinic endonuclease-redox protein \| chr2:17285731-17288769 FORWARD LENGTH=536