barSeed - Barley Seed Development Database

Probe CUST_17611_PI390587928

Source Contig U35_20566

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17611_PI390587928	Hv_44K_v2	TTATGTAAGAGCTTGACATCTGAATTTGATGTTGTCTCAGTAATCTACAGACTCTGCTGC	1305	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.180	1.919	1.168	0.892	0.457	0.510
Raw	655.394	902.266	490.881	590.025	103.855	127.274

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77342.1	420	7e-23	301 - 360	98	59 / 60	plus	ABC13348
JLOC1	JLOC1_51582.1	457	4e-23	301 - 360	98	59 / 60	plus
Harvest21	ABC13348	1390	3e-25	1306 - 1365	100	60 / 60	plus	ABC13348
Harvest35	U35_20566	1391	3e-25	1306 - 1365	100	60 / 60	plus

Contig Sequence (1391 bp)

>U35_20566 1391 Hv_44K_v2
AACGAAATAGAAATACGGTTGCATGGTAATGAGATGGAGCATAACATGAAGCAAGACATT
TGCTCAGTTATTCAGAATGAAGCTGTAGCAAAAGCAGTGTTAAACCTCAACTCTACATTG
TTGAAGTACAATGAGGAAAAGAGCTGCTCTGAAGCGGCATCGACTATACAAAAGCAGGAG
ATTGAGAATCTGAAGCGAGCTGTTGACTCTTTCAGTAAAGTAGTGAGAGAAAAAGAGGAG
TGTCAGATTGAATTGGGAGCAATGAAGGGTCATATGGATTTATTATCCCATCAACTTGAT
TTACTTAAAGTCAAAGTGGAAAAGCAAGACTCCTGTATATCTGAAAAGAACAAGGAGTTT
GATATGATTGTCGGCAGAGTGGAGCAAGCTCTGCAGCATGTACGTCAAAATGAGATCAAT
ATGAGCGAGTTCCATGACAGATTTAGAAATGCTACAGACTCTCTGAAGGAGGTGGAGAAA
CAAAATCATTATTTATGTAAAGTCATCGAAGAGAAGGAGAAAATATTCACATCAACCATT
TATAAAGAAAAGGAGTTCAAAGAACACATGACAAGTCTTGTTGAATCCATGAGAGAGTTT
GAGAATCTTGTTACAGATCAACAAGCTATCATTGCAAACAAAGTTCAGCACAGTGAATCA
AGGTTCTGTTTACTGAAAGACCAATGTAAACACCTCATGAAAGAAGGCAATCTTTTGAGA
AGGAAGGCATTGCGATACAAGGAGATATCTGAGACAAGAGGCTCTAATCTTCAAAAGGCT
GAGCTCGAGGTGGATTTACTTGGTGATGAGGTTGAGGCCTTAACGGATCTTCTTGCAAAA
ATCTATATTGCGCTCGACCACTATTCTCCAGTTTTGCAACACTATACTGGAGTTATGGAG
ACCTTGAACATGATCAAGAAACACATAAGCACAGCAAAGTAAAATGCCTTATGCACATTT
ACATCAGCTGGTGACATGTTAACAGCAGAATTTGGTCTTATTGGCCAGAAGGTGCACTTC
AGACGATCTGCGGTAACTTTTTTAGGCGGTTGATGCAGCCCTTGCTGTAGAAACCAAGGG
CTGTGTAGTGCAGAATAGCTTGTTCCCCTCCGTAGGCAGTAGATTTTGCTAGTCTTTGAG
CACCTTGCAACTGACCCACCCAAACCATGGCTAGTCCTTCCTTGTGCGTGTCTCTGAGCT
ACATTCTGATGTATGGGGTTGTGTCACCTGCTGATCTGCAAAAGTGAGACTTGAGTGACC
AGTAACAACGGTTGTGGAGTGCTTGTGACCAAATTTTCATTCGGTTTATGTAAGAGCTTG
ACATCTGAATTTGATGTTGTCTCAGTAATCTACAGACTCTGCTGCTTTTTTTTTAAAAAA
AAAAAAAAAAG

Homology of Contig U35_20566 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04810.1	662	9e-119	protein\|myosin heavy chain-related, putative, expressed
Brachypodium v1_2	Bradi2g08410.1	701	2e-154
Arabidopsis v10	None