barSeed - Barley Seed Development Database

Probe CUST_17603_PI390587928

Source Contig U35_32544

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17603_PI390587928	Hv_44K_v2	TACCTGTAGAAGTTTCTCATGCTTCGGATGATGACTCACCAGTATCCCCATGCATAGGAA	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376185	3037	2e-24	375 - 434	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.2	2750	2e-24	102 - 161	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.4	2946	2e-24	39 - 98	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.5	1330	2e-24	34 - 93	100	60 / 60	plus	None
MLOC	MLOC_47088.3	2604	2e-24	44 - 103	100	60 / 60	plus	ABC26520
MLOC	MLOC_47088.1	1198	2e-24	85 - 144	100	60 / 60	plus	None
JLOC1	JLOC1_30402.1	2816	8e-25	41 - 100	100	60 / 60	plus
Harvest35	U35_32544	484	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (484 bp)

>U35_32544 484 Hv_44K_v2
GCTTACCCGTCTCCGCCTCCACCCCTCTCTCTCGCCTGCCTCCTCCTCGCCTCGACTGCC
AACAAACCACCCTCCCAAAAGCCTCACGCGCCGTCCTCCTCCCCGCAACCCGGCCCACGC
GCATGCCGTCCTCCGCTGCTCGTCCAACCCGCCCGCGCGGTGGCCTCTGAATCCCGCCGC
CCTCTCCATCCAGATTCTCTTCATCTCGGTCGTCGTTCCGTGTCACCGTCTTCTGTTTCC
CTTTTTCCCAGCCAAGATAATCGTCGGCCCCTGCCGCCGGGAAGCTTCGTTCAGCAGGGG
CGGCGGCGGCGGCTCTCCTGCATGGAACGCAAGATGGGGACACTTCAGTTAGAAGACATT
GGTGATTACCATTTACCTGTAGAAGTTTCTCATGCTTCGGATGATGACTCACCAGTATCC
CCATGCATAGGAAGTGCGCACCAGGTAGAAATCCCCAATCTGGCCACAGATGATGAACGA
CGTC

Homology of Contig U35_32544 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None