barSeed - Barley Seed Development Database

Probe CUST_17602_PI390587928

Source Contig U35_18251

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17602_PI390587928	Hv_44K_v2	ATCCTGCGAATCTGTATCGTGACGAGTGGTGTTAGCTTTATTGCCAGGATCAATTCAGCT	1647	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.481	0.996	1.129	1.183	1.022	0.809
Raw	40.816	137.543	130.828	206.246	66.442	57.499

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18251	1752	3e-25	1648 - 1707	100	60 / 60	plus

Contig Sequence (1752 bp)

>U35_18251 1752 Hv_44K_v2
CGACCGCCAAACCCTCGCCACATCGCCCACCGCACCCCAGCGCCTCCCTCCCCATGCTGC
CGCTCGCCCGCCGCCTGCTGCCGCGCGGCCGCCGGCCCCTCCACGCGGGCCCGCCGGCGG
ACCCGGGCGTGCTGGCGACCCGCCTGGCGTCCCGCGCCGTGGTCCGGTTCCGGGGCCCCG
AGGCGGCGCGGTTCCTCAACTCGCTCCTCACCAACGACCTCCTCTCCCAGGGCGCCCCCG
CCTCGTCCCAGCCGCAGCGGTACGCGCCCACGCCCAACGCGCCCGCCCGGGCCCCGCCGC
CGCGGTACGCCGCGCTGCTCACGCCGCAGGGCAGGTTCCTCTACGACCTCTTCCTCTACC
GCCCCGCCCCGCGCTCCCAGATGCTCGACCGCACCGGCTCCGCGCCGCAGGCCGGGGAGG
TGGAGGGCGGGGACGGGGAGGTGCTCNCCGACNTCNACGCCGCCGAGGTCGACGAGCTGC
TCGCCTGCTTCAAGAGATATCGGCTACGGAGCAAGGTTGAGATAGATAATGTAAGCGAGG
AGTTTCTGTGCTGGCAAAGATTTGGGAGCGATGTGGCACATGCTGCGCCTTCCACCCAAG
AACCCGAGGCTCAATCCATTGGATGGGGACAAGGTAGTGACCATGCTGCTGAGTCATCTG
CACAAGGGAACGGTCATGGTTGGCAGTGGCTCAAAGATCCTCGGCTTGACATTCTTGGCT
ACAGAGGAATCTTTCCAGCTGATACAATACCACCACTTGTCGAGGCTGACAAAGAAGCAG
ATGAACGCCACTATTTGCTTTGGCGTATAGAAAATGGGGTTGCAGAAGGCTCAACTGAGA
TACCAAAAGGTGAAGCAATTCCACTTGAGTACAATCTCGCAGGCCTGAATGCTATTTCAT
TTGAGAAGGGTTGCTATATTGGTCAGGAGCTTATCGCACGCACACACCACCGTGGTGTCA
TTAGGAAGCGCCTGCTACCCTTGAAGTTCGTTGATGAAAACGACCAAGAACTCGAGCAGG
CTGTTGCTCCAGGCTCAGATGTCGTGGACGACGCCTCCGGTAAGAAAGTCGGTACAGTAA
GCACCGCTCTCGGCAGCCGTGGGATGGGCCTGTTGCGGCTCGAAGCAGCACTGAAGGAAA
ACGCAAGCCTCACCATCAGCGACAACAGAGATGTGAGGGTCAAGGCGATCAAGCCGGACT
GGTGGCCGGCTGAGTGGACAGAGGTCTTAGGACAGCAGAGCGCGGTCGCTTGATCTTTTA
AAGTTCCTGTATCTGACCAAAACTTCAAGTTAAATGAAGTGATGAGGTTCTTCGGAGTTC
ATCGAGGCAAACCTGAAGGATTTAGGCGCCGTCGTTACGGGAGCAGTTGCAGACAATTCA
GCAAAGCAGAGGTGATCTGACCGTGGTCTGTTGTTTTCTGGACCTAATTTCTTCTTTACC
CTCCCTTGTATCAGTGATAGATCAAGAATAAGCTACTATGACAGTGTACAAAGTATACGC
TCGAATAAGTATCGTTGTTTAGGGTTTGCCACTTCCCAGCGGCCGCTAGGCAGCATTCGA
TCTTGTAAAGCTTCGTTTACAGCTTGAATTGTTTGTTAAAATCACGCTGTATGGTCTATG
TGTTTTGCTTTTTGAGAACTGTATATGATCCTGCGAATCTGTATCGTGACGAGTGGTGTT
AGCTTTATTGCCAGGATCAATTCAGCTNGGTGCCTCTCAGGTCCATCATTGTGGGATTTT
TTATTAAAAAAA

Homology of Contig U35_18251 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04380.1	402	0.0	protein\|aminomethyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g51620.1	423	0.0
Arabidopsis v10	AT4G12130.1	393	3e-140	Glycine cleavage T-protein family \| chr4:7263640-7265425 FORWARD LENGTH=393