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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_175_PI390587928Hv_44K_v2CAAGAAAAATTGTACTGTTGTCCTTTGTTTTCTGTGACAGACTTGAATGTTTTCAGCTGG808GeneList: bisque4
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8743.2792.3820.7880.1520.160
Raw 91.625247.043153.08082.8833.9334.957



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_42555.18938e-2535 - 9410060 / 60minus
Harvest35U35_195898853e-25809 - 86810060 / 60plus



Contig Sequence (885 bp)

>U35_19589 885 Hv_44K_v2
ATAGCGTAGCACGGGTATTAGTATACCGAGGGTTCAGCGTATTGTCCCTCCCAACACACA
GGAATTCGCAACACACAGAGCTACAAAAATGGCCACCTCTACCGCAGCCGCCGTCTCCTG
TCTCCTCCTCCTCGCCACGCTCTCCATCGCCGCTGCGGAAATAGGGCATCCGCAGGCTCC
GGCGGCAGCCGCAGGCGCTGTGGGCGGCCGGACGGAGATCAGTGACGTGGGCAAGAACAA
GTTGGTGCAGTCCCTGGGCCGGTTCGCGGTGGCCGAGCACAACCGCCGCCTCGGCCACGG
CGGATCAGGCAACAACGGCGACCCCGTCCAGGTCCAGCTCGCGTTCACCGCAGTGGCGGC
GGCGCAGAAGCAGGTCATCTCCGGGGTGGTATACTACCTGAAGGTTATCGCCCGGGCCCC
GGCGGGCGGCGGCGGGGATAGGCCGTTCGACGCCGTGGTGGTCGTCAAGGCGTGGGCCAA
GTCCAAGGAGCTCGTGTCCTTCATGCCGTCTCCCAAATAATCGACAGGCTGGCTGTCAGG
AGTACGTATGTGCGCTCCGTGCTGGTTTTGTGTCGTTATTACTACCCTGGTTGCACTCTT
TTTCTCGTCACTTGAGCACTCCCTATGCATGTTTCAAGTCCAAGAAGTATGTACTGGTGT
AACTTACAAAATAAAGAGCGTGTTTCATGCTTGATTAATTCATGAACGCATGAACTATCT
GTCATCCATACTTATGTGAGGATTATCGATTGCGTTCGCACGTGTGCTGTTTCTATAAGG
GCGTGGGGGGTAGGAAATTTTTGTTATTCAAGAAAAATTGTACTGTTGTCCTTTGTTTTC
TGTGACAGACTTGAATGTTTTCAGCTGGAAAAAAAAAAAAAAAAA



Homology of Contig U35_19589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None