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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17598_PI390587928Hv_44K_v2CTGTGAATGTGATCACAATCCTCCATGCGGAAATGACAATAACAATGGAAAATAAATGAA821GeneList: midnightblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0360.1600.5311.5731.6152.653
Raw 35.628266.150774.0313436.7031273.9952279.747



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_31026.127362e-24946 - 100510060 / 60minus ABC08710
JLOC1JLOC1_20444.115768e-25228 - 28710060 / 60minus
Harvest21ABC087108653e-25775 - 83410060 / 60plusABC08710
Harvest35U35_182549123e-25822 - 88110060 / 60plus



Contig Sequence (912 bp)

>U35_18254 912 Hv_44K_v2
GTTTCAATCCCAATCTCTTTAGCATCTCACCACACAAGTACACAACAGATAGGCCACAAA
CGAAAAGGCAAGCACAGTTCGTACTGGGATCAACATGGGCAAGTTCATCTTCTTCGCGGT
GTTCCTGACGACCCTGGTGACCATCTCCGCCGCCCAAGGCGTGCTCGAGCAGAGCCTCGC
GGACGCGCAGTGCCGGGGCGAGGTCCAGGCGAAGCCGCTCCTCGCGTGCCGGCAGATCCT
CGAGCATCAGCTGACCGGCCGCGCCGTCGGCGTCCGGCCGTTTCAGGCCCAGTGGGGCGC
CAGGGACCGGTGCTGCCAGCAGCTCGAGAGCGTCAGCCGCGGGTGCCGCTGCTCCGCCCT
CCGTGGCATGGTGCGGGACTACGAGCAGTCCATGCCGCCGCTGAGGGAAGGGCGCCGCCG
CTCGTCGGGGGAGCGTCAACAAGAGCAGGGATGCTCCGGCGAGTCCACGGCGGAGCAGCA
GCAGGAGGTACAAGGGGGGCAGTACGGCAGTGAGACAGGTGAAAGCCAGCAGCAGCAGGG
AGGAGGCTACCACGGCGTGACCGTCGGGCGTGGTGGTCAGCAGCAAGGACAGATGCTCTG
TCGCGAGAGGCCGCAGCGGCAGCAGCAGGGAGAAGGGTTCTCCGGCGAGGGGGCGCAGCA
GAAACCGAAGGTCGGTCGCGTGAGGTTGACGAAGGTACGGCTACCGACCGCGTGCCGGAT
CGAGCCCCAGGAGTGTAGCGTCTTCTCCACCCTGCCAGTACTAGGCTAGCTGATTGGTCG
ACGCAGTCTGTGAGCTCTGATAATAAGTGTGACCTGTGATTCTGTGAATGTGATCACAAT
CCTCCATGCGGAAATGACAATAACAATGGAAAATAAATGAATAACCAAATGGATTTAAAA
AAAAAAAAAAAA



Homology of Contig U35_18254 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None