barSeed - Barley Seed Development Database

Probe CUST_17592_PI390587928

Source Contig U35_18258

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17592_PI390587928	Hv_44K_v2	CCTTACATTTTTGCCGTAATGGGCAATGGAATCCCTTGGTTTGGGCATTTCTCCAAAAAA	1121	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.845	2.209	1.139	0.808	0.344	0.510
Raw	1150.296	1352.178	627.301	706.472	104.384	168.871

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364520	2632	7e-23	2537 - 2593	100	57 / 57	plus	ABC11403
JLOC1	JLOC1_45888.2	2757	4e-23	2442 - 2498	100	57 / 57	plus
JLOC1	JLOC1_45888.1	2816	4e-23	2501 - 2557	100	57 / 57	plus
Harvest35	U35_18258	1192	3e-25	1122 - 1181	100	60 / 60	plus

Contig Sequence (1192 bp)

>U35_18258 1192 Hv_44K_v2
AAATTCATGAGGTGGCAAATGATGAAGCCAAAATGCTCTTTGATAAACAGCACTTTGGTA
AGCATCATGCTGTACAGTCAGTCCTCAAGCTTGAAGATGAGATTAAAAAGGGTGTACCTT
GTAGGTGTACAAAAGCTTCCTTCTAGCTAATGAGTATCAATCATCCAAGCTTTGCGAAGC
ACGTTTCTCGGAATGTGAAGATCAAATGGATCACCTTCAAGTCTTGAAACTTCCTTCCAT
GGCAAAGTTCAATGCAGGTTTTTTTTTACTGCAATCGGACGTTTGTAACAGAATGCGTGG
GGCCTGCAAGGGAAAGATACGAGCATAGGATGTCAAAGATGCTCCTCAAATCTCGTGCTC
TTTTCATCAAGGAGTACAATAACAAACTCTTCAATTGGTTGGTGACCTTCGCTCTGGTCA
TGGTCGTGCTTGGGCGCTTTGTCATCAAGTTCTTTTTACTTGAAATTGCTGCTTGGGTGA
TGTTCATCTTCCTAGAAACTTATACGAGAATGTTCTGGTCAGCGGAATCGTTGTACTATA
ATCCAGCCTGGCACATCATCGTTTCTTCCTGGGAAACCATCGTGTACAGTCCACTTCTCG
ATCTGGACAGATGGGCGATCCCCATATCGCTATTGCTATTGTTTTGGCTTTTTTACTGGC
GTTGCTTTGCTAGAAGGAAACGTGGCAGCCGCTCGCTGCTGCCACTGCACAAGAACTCTC
ACAAGAACTCCAATCGCCCAAGATCAGACTGATCACATGGCTTTGTTTCTGCAGTGGAGA
TACAAAACATCACCACCAAAAAAAGATAGAAAAACAAGAGGATAGTTTTGGGTCTTTCAT
CCATGTGGTTGGATGGGCTTTCTTTTGATGACGGTCGCCATGGCACATGTGCTGCGCCTT
GGACTCATTTTGGCTGATGATGGGACGAGCATTCTGGCGTGTGGCGCTTGCGCTTAGCGT
TTGTTGTAACATGGATATATTTATGTACTTTTGTAGCTGCTAGGATGTTCTTACGAGGTG
TGGCCTCATTCATTGGTTGTTGTTCGCTTGCGAACAAACCTCATATATGGATCTGTTTTC
TTAAGCCGTAGTGCGCACGATTTTCTGAACAGACTGATGGACCTTACATTTTTGCCGTAA
TGGGCAATGGAATCCCTTGGTTTGGGCATTTCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58240.1	395	2e-115	protein\|GTP binding protein, putative, expressed
Brachypodium v1_2	Bradi1g05490.1	608	5e-120
Arabidopsis v10	AT2G38840.1	602	2e-81	Guanylate-binding family protein \| chr2:16227329-16232115 FORWARD LENGTH=602