barSeed - Barley Seed Development Database

Probe CUST_17591_PI390587928

Source Contig U35_44521

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17591_PI390587928	Hv_44K_v2	TATTATTTTCACAAGCGACCTTCCTCAGATAAATCTTTTTTGGTGGTTGCAGGGTATGGT	186	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.303	1.500	1.174	1.235	0.487	1.218
Raw	2.567	35.267	27.287	46.771	5.809	17.345

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC42350	524	3e-25	187 - 246	100	60 / 60	plus
Harvest35	U35_44521	524	3e-25	187 - 246	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_44521 524 Hv_44K_v2
TGAACTTTTGCTTGCGCCTTTGGGAGAGGTCGTTCTGCTTTATCGCCAATTTGCCATGGG
CACAAATCGTATTCTTTCATTTTCTGTGTGTGATACTTCTGAACAACTGCGGAAACAAGT
GCATTGCCAATCGCTTGTATGCATGTATCATACAAATATTATTTTCACAAGCATGTATCA
TACAAATATTATTTTCACAAGCGACCTTCCTCAGATAAATCTTTTTTGGTGGTTGCAGGG
TATGGTAAGATGCCTGGATACGAGCATGTTTTCACCGACTTCCTGCTGAGTCTGGACCAG
CAGAAGGAGTTCAAGCGACGACCAAGCTATACCTCGGGCGAGGGGTGAGAAGGCTCTCTT
CCCCTTTGACTCCTTGCCAGTATGTTTGTCTTCGCATTCGCTGTGTGTACGAATCAATGT
GCATATCAGGAGAAGGAAGGAAGGATCATCTTATTCTGTGGTAGAGTTGGGCATCAGTAG
TTGCGATAAGGCAGCGAGGACTGTGTCGAACTGTAATTATTAAT

Homology of Contig U35_44521 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None