- Probe CUST_17590_PI390587928
- Source Contig U35_18259
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_17590_PI390587928 | Hv_44K_v2 | TATAAGGAAAAACTGGAGGGCTTAGGTCTACCTGTACCGGTGGAGAAACTGCAGCAAATT | 134 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.741 | 1.986 | 1.121 | 0.680 | 0.526 | 0.512 |
| Raw | 115.014 | 114.935 | 65.232 | 60.602 | 16.449 | 17.753 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364520 | 2632 | 2e-24 | 1376 - 1435 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.1 | 2362 | 2e-24 | 1661 - 1720 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.7 | 1228 | 2e-24 | 514 - 573 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.9 | 1373 | 2e-24 | 194 - 253 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.2 | 2828 | 2e-24 | 1635 - 1694 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.3 | 2694 | 2e-24 | 1534 - 1593 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.5 | 2723 | 2e-24 | 1561 - 1620 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.6 | 2737 | 2e-24 | 1561 - 1620 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.8 | 1586 | 2e-24 | 632 - 691 | 100 | 60 / 60 | plus | ABC11403 |
| MLOC | MLOC_69268.4 | 2680 | 2e-24 | 1534 - 1593 | 100 | 60 / 60 | plus | ABC11403 |
| JLOC1 | JLOC1_45888.2 | 2757 | 8e-25 | 1265 - 1324 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45888.1 | 2816 | 8e-25 | 1338 - 1397 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC11403 | 966 | 3e-25 | 773 - 832 | 100 | 60 / 60 | minus | ABC11403 |
| Harvest35 | U35_18259 | 744 | 3e-25 | 135 - 194 | 100 | 60 / 60 | plus |
Contig Sequence (744 bp)
>U35_18259 744 Hv_44K_v2 GGGCTGCAGGAATTCGGTCGAGGGTGTCCTTTCTGCAGCAGATACTTGAAGCTTTGAATA AAGGAGAGATTCCATCAACAGGATCTCTTGTTGAAATTTTCAACAAGGCTATTCTTGAAC GCTGTCTGAAGGTGTATAAGGAAAAACTGGAGGGCTTAGGTCTACCTGTACCGGTGGAGA AACTGCAGCAAATTCATGAGGTGGCAAATGATGAAGCCAAAATGCTCTTTGATAAACAGC ACTTTGGTAAGCATCATGCTGTACAGTCAGTCCTCAAGCTTGAAGATGAGATTAAAAAGG TGTACAAAAGCTTCCTTCTAGCTAATGAGTATCAATCATCCAAGCTTTGCGAAGCACGTT TCTCGGAATGTGAAGATCAAATGGATCACCTTCAGGTCTTGAAACTTCCTTCCATGGCAA AGTTCAATGCAGGTTTTTTTTTACTGCAATCGGACGTTTGTAACAGAATGCGTGGGGCCT GCAAGGGAAAGATACGAGCATAGGATGTCAAAGATGCTCCTCAAATCTCGTGCTCTTTTC ATCAAGGAGTACAATAACAAACTCTTCAATTGGTTGGTGACCTTCGCTCTGGTCATGGTC GTGCTTGGGCGCTTTGTCATCAAGTTCTTTTTACTTGAAATTGCTGCTTGGGTGATGTTC ATCTTCCTAGAAACTTATACGAGAATGTTCTGGTCAGCGGAATCGTTGTACTATAATCCA GCCTGGCACATCATCGTTTCTTCC
Homology of Contig U35_18259 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g08400.1 | 393 | 2e-104 | protein|GTP binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g05490.1 | 608 | 1e-79 | |
| Arabidopsis v10 | AT2G38840.1 | 602 | 5e-94 | Guanylate-binding family protein | chr2:16227329-16232115 FORWARD LENGTH=602 |