barSeed - Barley Seed Development Database

Probe CUST_17580_PI390587928

Source Contig U35_20572

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17580_PI390587928	Hv_44K_v2	GCTGAATATAGGCTCTTGCAACTTGCAAGGAACAAAAAGGAGATGTGAAAATGGGGGTGC	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7657.1	1413	2e-24	1278 - 1337	100	60 / 60	plus	ABC15187
JLOC1	JLOC1_5059.1	1202	8e-25	1060 - 1119	100	60 / 60	plus
Harvest21	ABC15187	587	1e-23	499 - 558	98	59 / 60	plus	ABC15187
Harvest35	U35_20572	587	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_20572 587 Hv_44K_v2
GACCTCGGCTTCACCTTCTCCGAGACCGAGGTCGACGCCGAGCTCGCGTCCATCGTGCCG
GGGCTCAGGCGGCTGCGCGCGGAGGAAGAAGCCAAGAGAGCCAAGGCGGAGGCGGAGGAG
GAAGCCTGTAGAAGAAACAGGGCCGCCGCGGAGGCCTCCCACGCGGCGCCGAGGAGGCCC
TACTTGTCCGAGGCGTGGGAGGACGAGGAGGCGGAGGTGAGGAGGATGCTGAGCAACTTC
AGGATCCCGGCCGCCGCCGACGGCGCTGACCTCAAGGAGAACCTCCGGCTCTGGGCGCAC
ACCGTGGCCTCCGCCGTCCGGTGATGGCTTTGACCAAGAGCTCAACTTCTTTTTTTTGTT
TGCCGTGCAGTGGGTGGAATGATGAACTGTAAATATTTTTTGCCACGTGCATGCGCATCG
ATCTTTTCAAGTTATTTTAGCAGGAGCTTGCGTTAGTTTAGTCACGACAATCTAAAATGT
ATTCAAATTTCAAATTCAGCTGAATATAGGCTCTTGCAACTTGCAAGGAACAAAAAGGAG
ATGTGAAAATGGGGGTGCATAATTTTTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_20572 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None